UFO06465.5prime Sequence
1141 bp (1033 high quality bases) assembled on 2009-08-18
> UFO06465.5prime
CAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTGTCATGGTG
CTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAAGTACCCGG
AGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAACAACCAAA
CGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCCCACCAATT
GCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCACGATCGCGT
TGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCTGGAAGTCA
TCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCCGCATGGAA
TCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGACAGTTTTGA
GCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAAAGATATCT
CGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCTCGGGAATA
GGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTGGATGCCTT
GGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGTGCAGGTTG
AAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTTTGATCCAG
GGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCAATCTTCTACGGTCC
AAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCTAGTAGTTGCT
CCTATTCCTTCCTTTCTAACCACGGAATTCTAAAAGTACAGCTCACACCC
GAATCGGATCCTTCTACGTATCCTGCGATGAGGATTGGACTGTTATTTTG
AGCCGCACCTCCGATGATGTGAACTTCGAACGCGGCTGGCTGGATTATCG
CGATGGCTTTGGCAATTTGGCTGGGGACTTCTTTATTGGTCTCAACAAAC
TGCATGCCCTCACTTCATCGCCTTGCACGAACTGCGGATTGTGGATGGAA
GACTTCTCGGCAACGTGGCGTATGCGGGATATTCGTTGTTGCCATTGGCA
GCGAAAAGAACTATATCAACTCCGTCTTGCTGGCAATCCAGGATAATTTG
ATCCTCACTGGAAATCATGCCTCATGCTGACTAGTTAACTT
UFO06465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10359-RG | 1684 | CG10359-RG | 128..1229 | 6..1101 | 5250 | 98.9 | Plus |
| CG10359-RE | 1762 | CG10359-RE | 644..1307 | 444..1101 | 3060 | 98.2 | Plus |
| CG10359-RE | 1762 | CG10359-RE | 128..566 | 6..444 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3614307..3614768 | 625..1083 | 1940 | 98.1 | Plus |
| 3L | 28110227 | 3L | 3614068..3614254 | 443..629 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 3612319..3612492 | 6..179 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 3613749..3613882 | 311..444 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 3613075..3613205 | 180..310 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:01 has no hits.
UFO06465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:53 Download gff for
UFO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 122..1248 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:39:33 Download gff for
UFO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 124..1250 | 1..1118 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:56 Download gff for
UFO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 124..1250 | 1..1118 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:56 Download gff for
UFO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3613749..3613882 | 311..444 | 100 | -> | Plus |
| 3L | 3614070..3614253 | 445..628 | 100 | -> | Plus |
| 3L | 3612315..3612492 | 1..179 | 98 | -> | Plus |
| 3L | 3613075..3613205 | 180..310 | 100 | -> | Plus |
| 3L | 3614311..3614810 | 629..1118 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:39:33 Download gff for
UFO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3612315..3612492 | 1..179 | 98 | -> | Plus |
| arm_3L | 3613075..3613205 | 180..310 | 100 | -> | Plus |
| arm_3L | 3613749..3613882 | 311..444 | 100 | -> | Plus |
| arm_3L | 3614070..3614253 | 445..628 | 100 | -> | Plus |
| arm_3L | 3614311..3614810 | 629..1118 | 96 | | Plus |
