UFO06468.5prime Sequence
1110 bp (1023 high quality bases) assembled on 2009-08-18
> UFO06468.5prime
CAGTCGACATGGCCACGATGCGCATACCCAAACAAAAGGTGATCCTGTGC
GGCGACTACGGAGTGGGCAAGAGCTCCCTGTTCCGGCGCTTCGCCACCAA
CACCTTCATCACGGATACGGACAGGAAATCCACGTTGGGACTGGACCACA
TCGATAGGGAATACAGTGTGAATGAAAAGCAGATCAAGCTCCAACTCTGG
GACACCGGTGGCATGGAGCGTGTGGCCTCGGTCACATCCTCGTACTACAA
GTTCGCCGAGGGAGCCATCCTGGTCTTTGCTTTGGACAACGCCGCTTCGT
TCCACTCGCTGTCGCAGCACTTGCTGGACATTGTGACCTATGCAGAGAAT
GCCAAGATCTTCATCTGTGGCAATAAGAGCGATCTGGATGGCAGGGAGCC
GGAGGTCAGCGATGAGGAAGTGGAGGCCTTCTGCGAGCAGTGCCACTCAC
TGATCAGTGCCACGTACAAGACCTCCTGTCGCAGCGGCGCCGGTGTGGAG
GAGATGTTCCGTGACATCTCTAGGCAACTGGTCCACGCCAATCGCTCCAA
AATGGAACTGCAGGCACTGGAGCACAAGAGCTTCCAGGTGGACACTGCGA
GCAGCGGCGCGGCGACCAACGAGGAGGACGCCTCCTCCTGCGGCTGCGCA
AGCCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCGCCCTGCACT
CATCGCAGTACTGTTGTAATTCATTAGCATTCTGCCGACATGGAGCCATC
ACAAACGGCATGATGACCTGATCGCAGCGGCATCAGCACTGTCGCTGCGT
ATAATATTTGCCCATGTGAAACGGGCAGGAGTGTTCTATATGCACGTTAA
TCAAACTGGTGACTCACCAGAATGCTGAACGAAAACATTCATACGTAGAA
TGCCGTTACG
UFO06468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RabX6-RB | 1286 | CG12015-RB | 103..742 | 8..647 | 3200 | 100 | Plus |
| RabX6-RA | 1286 | CG12015-RA | 103..742 | 8..647 | 3200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 690947..691407 | 187..647 | 2305 | 100 | Plus |
| 3L | 28110227 | 3L | 690619..690799 | 8..188 | 905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:24 has no hits.
UFO06468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:57 Download gff for
UFO06468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX6-RA | 97..744 | 1..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:53 Download gff for
UFO06468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX6-RA | 99..746 | 1..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:18 Download gff for
UFO06468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RabX6-RA | 99..746 | 1..653 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:18 Download gff for
UFO06468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 690615..690799 | 1..188 | 98 | -> | Plus |
| 3L | 690949..691411 | 189..653 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:53 Download gff for
UFO06468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 690615..690799 | 1..188 | 98 | -> | Plus |
| arm_3L | 690949..691411 | 189..653 | 99 | == | Plus |
