UFO06470.5prime Sequence
1128 bp (1012 high quality bases) assembled on 2009-08-18
> UFO06470.5prime
CAGTCGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCATTCACCGTC
GCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTCTGTGACAC
CTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCCCCTCAAGC
GAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGGATGCGGAT
CAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTGCCAGTGCT
GGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCACTGCAATCC
TGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCAGCGTTGAG
TATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTGCAGATTCG
CCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCACCAAGTTCA
GTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGCGCCAGTTG
TCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTGAAGCTCTT
CCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCAGGAGAAGC
TGCGTCTGCGTTTGCAACCAGTAGATCCAAAGACTCTAGCGCCCATCCTA
AGTTCGGCACGTGCCAATGTGGAGTACGTGCGAATGGCGTACGGTGACAG
TAAGCTGCGGGTGCAGCCGGAGTACGGAGTGCCCTACGCCACCGGTGACA
TCCTCATGTTCCATGTGAACCTGGAACAGCTGGATCGAGTGGCCTATCTG
GTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGTCTCCTAGG
ATACTCGCACCTGCTGCACACCTCGTTCTCCGGCACTGAAGGCGATGTGT
CCATCGACCTTATTTCGCCGCTCTGGCAGCGGCGTGGTGGGTCAACTGCG
TATTGAGTACCTGCCCATTCCGGCCCATGGAGAAGGATGGCTTTCGATCT
GCGCACCAGCTTCGCCACTACTGGGGCTCAAATGGTACGGCCTTGGAGAT
TGTCCATTCGGGATTGGTAAATCTCTAACGTTCCCCACGAATGCGGCTTC
GCTTATCAGGAACCGGTGGGCACAATGC
UFO06470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:13:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 35..1157 | 6..1128 | 5195 | 97.8 | Plus |
| CG9394-RA | 2312 | CG9394-RA | 213..1335 | 6..1128 | 5195 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:13:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21118606..21119706 | 6..1107 | 5045 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:13:58 has no hits.
UFO06470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:46 Download gff for
UFO06470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 211..1221 | 1..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:29 Download gff for
UFO06470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 211..1221 | 1..1017 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:47 Download gff for
UFO06470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 211..1221 | 1..1017 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:47 Download gff for
UFO06470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21118604..21119614 | 1..1017 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:29 Download gff for
UFO06470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17006109..17007119 | 1..1017 | 99 | == | Plus |
