UFO06472.5prime Sequence
1089 bp (980 high quality bases) assembled on 2009-08-18
> UFO06472.5prime
CAGTCGGACATGAAGAACGCTGTTGCTATTCTGCTGTGCGCCCTGCTGGG
TCTGGCCTCTGCCTCCGACTACAAGCTGCGCACCGCCGAGGATCTGCAGA
GCGCGCGCAAGGAGTGTGCCGCCAGCAGCAAGGTGACCGAGGCCCTGATC
GCCAAGTACAAGACCTTCGACTATCCCGACGATGACATCACCCGCAACTA
CATCCAGTGCATCTTCGTCAAATTCGACCTGTTCGATGAGGCCAAGGGCT
TCAAGGTGGAGAACCTGGTGGCGCAACTGGGCCAGGGCAAGGAGGACAAG
GCCGCGCTGAAGGCCGACATCGAGAAGTGCGCCGACAAGAACGAGCAGAA
GTCGCCCGCCAACGAATGGGCCTTCCGTGGCTTCAAGTGTTTCCTTGGCA
AGAACCTGCCCCTCGTGCAGGCCGCCGTCCAGAAGAACGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAAGCCATCACAAACGGCAT
GATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAA
TATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCAC
GTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAA
ACATATTCTCATAAACCCTTTAGGAAATAGGCAGGTTTCACCGTAACACG
CCACATCTTGCGATATATGTGTAGAAACTGCCGAATCGTCGTGTATTCAC
TCCAGAGCGATGAAACGTTCAGTTTGCTCATGGAAACGGTGTACAGGTGA
CACTATCCATATCACAGCTCACGTCTTTCATGGCATACG
UFO06472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp44a-RB | 1076 | CG2297-RB | 304..733 | 9..438 | 2150 | 100 | Plus |
| Obp44a-RA | 648 | CG2297-RA | 76..505 | 9..438 | 2150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8134513..8134897 | 438..54 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 8134966..8135012 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:08 has no hits.
UFO06472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:48 Download gff for
UFO06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 76..509 | 4..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:21 Download gff for
UFO06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 72..505 | 4..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:54 Download gff for
UFO06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp44a-RA | 72..505 | 4..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:54 Download gff for
UFO06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8134513..8134896 | 55..438 | 100 | <- | Minus |
| 2R | 8134967..8135016 | 4..54 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:21 Download gff for
UFO06472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4022018..4022401 | 55..438 | 100 | <- | Minus |
| arm_2R | 4022472..4022521 | 4..54 | 94 | | Minus |
