UFO06473.5prime Sequence
1084 bp (995 high quality bases) assembled on 2009-08-18
> UFO06473.5prime
CAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCCTCAGCCTT
AGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCCACCCCGCA
GCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCACAACTCCGG
CCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGACCACCTTAC
TCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGACGACTTTAG
GTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGGCTATCCCA
CGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTAGGTTTTCC
AACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAATTACGGCAA
CGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTCCTCCCAAG
GAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATAATAATCCG
AATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAGAATCCCTT
CCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTTGGAACGTC
AGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGAAGCTGCGC
ATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGCACCGCCAA
TGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTTTACCCAAA
CGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGCGCATCACT
GCCGAGCAATCCAAGCGGATCAATAAGGATCTCATCTTCGACCGTCGCCT
CTACAGACAACTGATGCTGCAGTCGGAAGTGGGACCCAATGCTCTGCCCC
TAGATGTATTGGATAGGTATAATCGCCTGCTCAATGAGATGCTGTTCCTG
TACAACAGCGCCGAAATCTGTGCCTACCAGCAGCCCTTTCAGTGCGATCT
TCCCTACATACCCCAGCTGAAGACATCATGGCAAAAGCAGGGACTGGATG
ACTGCACCACACTGTGAATACCACCAGAGGCGAC
UFO06473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-3-RC | 3426 | CG17988-RC | 284..1342 | 9..1063 | 5150 | 99.3 | Plus |
| Ance-3-RB | 2981 | CG17988-RB | 284..1342 | 9..1063 | 5150 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13915398..13915905 | 251..758 | 2540 | 100 | Plus |
| 2L | 23513712 | 2L | 13915008..13915250 | 9..251 | 1215 | 100 | Plus |
| 2L | 23513712 | 2L | 13916405..13916564 | 758..917 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 13916620..13916752 | 917..1047 | 535 | 97 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:40 has no hits.
UFO06473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:08 Download gff for
UFO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1344 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:53 Download gff for
UFO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1344 | 1..1066 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:07 Download gff for
UFO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1344 | 1..1066 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:07 Download gff for
UFO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13915004..13915250 | 1..251 | 98 | -> | Plus |
| 2L | 13915399..13915905 | 252..758 | 100 | -> | Plus |
| 2L | 13916406..13916564 | 759..917 | 100 | -> | Plus |
| 2L | 13916621..13916734 | 918..1030 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:53 Download gff for
UFO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13915004..13915250 | 1..251 | 98 | -> | Plus |
| arm_2L | 13915399..13915905 | 252..758 | 100 | -> | Plus |
| arm_2L | 13916406..13916564 | 759..917 | 100 | -> | Plus |
| arm_2L | 13916621..13916734 | 918..1030 | 98 | -> | Plus |
