UFO06476.5prime Sequence
1101 bp (1016 high quality bases) assembled on 2009-08-18
> UFO06476.5prime
CAGGTCGACATGGTCGGTTGGAGCCGTTTGCTGTCGCCGGCGGCGAAGTT
CGCCAGCTACCGGGCTGTCCTGCAAGAGCCCGCGTGCCGGAATGCCCTGC
ACCAACAGCTGCGCAGAATGGGAGGCGATCATGGACACCACCAAATGATC
ATCAAGCCATCCCGCTTCCAGTGGGACAAGTTCAAGGATCTGTTGCACTT
TTACGTAATGCTCGGCGTCATCCCAGTCACCGCATTGGTTCTCTACGCGA
ACATCTTTGTGGGACCCGCGCAGCTCGCCGAGATTCCCGAGGGCTATGAG
CCCAAGCACTGGGAGTACGAGAAGCACCCCATCTCGCGCTTTATTTCCCG
CTACATTTTGAACTCGGATCAGCAAAACTACGAGAAATCCCTGCACTATC
TCTACGAGGAGAACGAAAAAGCCCAGATTCGACTCCTTGAGGACGAAGTA
CGTCGCAAGATGTCGGAGCGCAATGATTACCAGGCCTACTACTACCGACC
ATCGGTGGCCAAGTACCACAGGATTTCGAAAGAGGCTGCTGACGAGCTGG
AGGCTCTGCGCGGAGACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGG
GCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAA
CTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAA
AAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCT
GAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAA
ATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGC
ATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGC
CAGCGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGAAC
GGGGCGAGAGTGTCATATTGGCACGTTTAATCAAAACTGTGAACTCACCC
AGGATGCTGAACGAAAAACATATCTCATAACCCTTAAGAATAGCAGTTTC
ACGTACACGCCCAATCTGCATATGTGTAGAACCTGCCGGAATCGCTGGAT
T
UFO06476.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(3)neo18-RB | 714 | CG9762-RB | 73..630 | 10..567 | 2790 | 100 | Plus |
| l(3)neo18-RA | 888 | CG9762-RA | 184..741 | 10..567 | 2790 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12138016..12138246 | 324..94 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 12137643..12137779 | 567..431 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 12137838..12137946 | 431..323 | 545 | 100 | Minus |
| 3L | 28110227 | 3L | 12138317..12138401 | 94..10 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:57 has no hits.
UFO06476.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:11 Download gff for
UFO06476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 10..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:27 Download gff for
UFO06476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 10..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:55:41 Download gff for
UFO06476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)neo18-RA | 184..741 | 10..567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:55:41 Download gff for
UFO06476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12137643..12137778 | 432..567 | 100 | <- | Minus |
| 3L | 12137838..12137944 | 325..431 | 100 | <- | Minus |
| 3L | 12138016..12138245 | 95..324 | 100 | <- | Minus |
| 3L | 12138317..12138401 | 10..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:27 Download gff for
UFO06476.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12130743..12130878 | 432..567 | 100 | <- | Minus |
| arm_3L | 12130938..12131044 | 325..431 | 100 | <- | Minus |
| arm_3L | 12131116..12131345 | 95..324 | 100 | <- | Minus |
| arm_3L | 12131417..12131501 | 10..94 | 100 | | Minus |
