UFO06477.5prime Sequence
1101 bp (979 high quality bases) assembled on 2009-08-18
> UFO06477.5prime
CAGTCGACATGGACAAGTTGCGCCGCGTTCTGAGTGGAGATGAGCCCACT
CCGGAGGAGGAGAGCAGTATCATTACGCAGATCAACGACATGTCCACTTT
GAGCTGGTCCACTCGGATCAAGGGATTCGTCATCTGCTTTGCCTTGGGCA
TCTTACTTTCCCTACTCGGCTCGGTCGCCCTATTTCTGCACAGGGGCATT
GTGGTCTTTGCGGTCTTCTACACTCTAGGAAACGTCATCTCGATGGCCAG
TACCTGCTTTCTCATGGGTCCCTTCAAGCAGATCAAGAAAATGTTTGCGG
AAACACGGCTGATCGCCACCATCATCGTGCTCGTCATGATGGTCCTGACG
TTCATCGCTGCTATTGTGTGGAAAAAGGCGGGACTCACGCTTATATTCAT
TATCATACAATCTCTGGCCATGACCTGGTACTCGCTGTCGTACATCCCCT
ACGCCCGCGATGCGGTCAAGAAGACCATGTCGGCAATTCTGGAGGTCGCA
AGCCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTG
TCGCCTTGCGTATATATTTGCTCATGGTGAAACGGGGGCGAAGAGTTGTC
CATATTGCCACGTTTAAATCAAACTGGTGAAACTCCACCCAGGGATGCTG
AACGAAAAACATATTCTCAATAAACCCTTTAGGAATAGCAGTTTTCACCG
TACACGCTCACATCTGCTAATAATTGTGTAGAACTGCGAAATCGTCTGCA
TTCATTCGAGCGATGAACGTTTCGTGCTCATGCAAACGGTAACAGGTGAA
C
UFO06477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5104-RB | 787 | CG5104-RB | 148..636 | 9..497 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20521408..20521584 | 74..250 | 885 | 100 | Plus |
| 3L | 28110227 | 3L | 20522154..20522283 | 368..497 | 650 | 100 | Plus |
| 3L | 28110227 | 3L | 20521657..20521777 | 248..368 | 605 | 100 | Plus |
| 3L | 28110227 | 3L | 20521156..20521227 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:40 has no hits.
UFO06477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:25 Download gff for
UFO06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5104-RB | 144..636 | 1..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:24 Download gff for
UFO06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5104-RB | 144..636 | 1..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:35 Download gff for
UFO06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5104-RB | 144..636 | 1..497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:35 Download gff for
UFO06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20521152..20521227 | 1..80 | 95 | -> | Plus |
| 3L | 20521415..20521584 | 81..250 | 100 | -> | Plus |
| 3L | 20521660..20521777 | 251..368 | 100 | -> | Plus |
| 3L | 20522155..20522294 | 369..512 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:24 Download gff for
UFO06477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20515255..20515394 | 369..512 | 93 | -> | Plus |
| arm_3L | 20514252..20514327 | 1..80 | 95 | -> | Plus |
| arm_3L | 20514515..20514684 | 81..250 | 100 | -> | Plus |
| arm_3L | 20514760..20514877 | 251..368 | 100 | -> | Plus |
