UFO06478.5prime Sequence
1125 bp (1011 high quality bases) assembled on 2009-08-18
> UFO06478.5prime
CAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTAGTTTGCTT
CTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCACTCCCCCC
CTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAACAGTCGTAA
ATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAACTAAACCG
TGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAACGAAGAGGA
ACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAATTGG
AATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCAGTGTCTAC
AATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGT
CTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACGTATTCCTC
CCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAGATCCGCGG
GTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTCCCCAAAGA
AAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATGGCTGCCAA
ATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCCTGGCACCC
CCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCAGAACCAAC
ATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACCCAAAGGCG
ACGGAACTGACTCGACAATCGATGACTTTTTGGCAAAGGTGGATCTCACT
GTCGCGGACATCAAAGAGGAGGATGGCCAGGTGGTCACCACAATCGTGGA
CAAACAAGGACGCGTTCTAGTGCCAGTTTTGCACTGAGCAATGAGAACGA
ACAAGGGGGTGCGCAAACTATCAAGTCGCACTGGAAAAGCAAGCTTTTCT
AGACCATTCGTTTGGCGCCGCGGGCCCAGGTAGTGGTCATAATCATATCA
TATCATAATCATATCACACTAGCTAGGAGATCTGTCATGACTAGTGCTGA
TCTCACAATAAAAACGCCGCGCAACGAACGGTCTGACCATCGAATGGAAT
TCTGAGTCATACTGATCTATTCCAA
UFO06478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31769-RA | 1086 | CG31769-RA | 55..987 | 9..938 | 4590 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14109696..14110575 | 938..62 | 4250 | 99.7 | Minus |
| 2L | 23513712 | 2L | 14110632..14110685 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:04 has no hits.
UFO06478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:24 Download gff for
UFO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:29 Download gff for
UFO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..938 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:45 Download gff for
UFO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..938 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:45 Download gff for
UFO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14109696..14110574 | 63..938 | 99 | <- | Minus |
| 2L | 14110632..14110691 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:29 Download gff for
UFO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14109696..14110574 | 63..938 | 99 | <- | Minus |
| arm_2L | 14110632..14110691 | 1..62 | 93 | | Minus |
