UFO06480.5prime Sequence
883 bp (122 high quality bases) assembled on 2009-08-18
> UFO06480.5prime
CAATCCACATGCATCGATTTTTGGGAAGGAGCAGCCGAAGCCTTTTGCTA
AAATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAGGTCATATT
TCCCCCCCAATCGGATTTTCCCGATCGGCATATTGGGCCTCGAAAGACGG
ATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGGCGGAGCTC
ACAGACAAAGCTGTGCCCCAAAGCATTCAACTGAAGAGGGAACTCGACCT
GGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCGCGACATCT
CGCTAAAAAATCACCTGTGGCGCTCCTACATCGGAATGGGTTACCACAAC
TGCCATGTGCCGCACACCATTATCCGGAATATGTTCTAGAATCCGGGTTG
GACCACTCACTACACCCCGTACCAGCCGGAAATCGCCCAAGGACGCTTGG
AGTCGCTGCTGAACTATCACACCCTGGTAACCGATCTCACCGGCTTGGAT
GTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCCGAGGCCAT
GTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCTGTCGAACA
GGGTGCATCCGCAGACGCTGTCCGTAGTCAAGACGCGAACGGAAGCCTTG
GAGCTGGAAATCGTGGTGTGACCTATTGAACAGGCGGATCTGCCAAGCCG
CGAATTGGCTGGCATTCTTCTCCAGTATCCATATACTTATGGTGATGTCA
AGGACTTCGAGGATATCGCATCTTTGGCAAAGAAGATGGGACCCTCGTGG
AGGTGCCGACCGATTTGTTGTCGTAACCCTTCTGCGTCCTCATGCGAATG
TTGTAGCTGATATTGCAATGGGAACTCCATCGA
UFO06480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3999-RB | 3074 | CG3999-RB | 62..931 | 8..875 | 3850 | 96.4 | Plus |
| CG3999-RA | 3197 | CG3999-RA | 62..931 | 8..875 | 3850 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10252171..10252690 | 265..784 | 2450 | 98.1 | Plus |
| 3R | 32079331 | 3R | 10251579..10251756 | 8..185 | 770 | 95.5 | Plus |
| 3R | 32079331 | 3R | 10251887..10251967 | 184..264 | 375 | 97.5 | Plus |
| 3R | 32079331 | 3R | 10252797..10252883 | 790..875 | 250 | 88.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:05 has no hits.
UFO06480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:20 Download gff for
UFO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 56..940 | 1..882 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:41 Download gff for
UFO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 56..940 | 1..882 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:26 Download gff for
UFO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 56..940 | 1..882 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:26 Download gff for
UFO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10251573..10251756 | 1..185 | 93 | -> | Plus |
| 3R | 10251889..10251967 | 186..264 | 97 | -> | Plus |
| 3R | 10252171..10252697 | 265..790 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:41 Download gff for
UFO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6077295..6077478 | 1..185 | 93 | -> | Plus |
| arm_3R | 6077611..6077689 | 186..264 | 97 | -> | Plus |
| arm_3R | 6077893..6078419 | 265..790 | 97 | -> | Plus |
