UFO06481.5prime Sequence
1056 bp (863 high quality bases) assembled on 2009-08-18
> UFO06481.5prime
CAGTCGAACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGGGCC
AGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTC
GCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTC
AACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTA
CAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCG
AACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTT
TTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACG
TAACAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGA
ATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAAT
CACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAA
GTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATC
TGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATC
AACACCATCAGTGCGGAGCTCTTGCGCAGCGGCGAGACACCGCGACACTT
TCATCACCCGGGCTCTGTTGGCCACCAACAACGTGGACGATGCCTTCCGC
GTGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCATTTC
ACCTTCCTGGCGGATCCCCGGCCAAATGTGCTACAATGTGAAGAGGGCAC
CATCGCCGGACCGCAAGAATGAGTCTCTTTTGAATATCAAGGAGGTGCCG
CTGGGGCAAGCACACTACCATGTCAATCAATTCTATCGCCTTCGGCAGGA
TCAGGCCACAATCTGATGATTAGCTCCGACATCCTCCAGAATGCAAACTT
TGGACCCGTACAATCCACCCCAATGAACCGACATGATGTGCGCCACATGC
CTGAGCCAACCGTTCCGGGACATAGTTCACTGCGTCTGCACGAAAAACAA
CGTCTG
UFO06481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| t-RB | 1632 | CG12120-RB | 232..1219 | 10..1000 | 4365 | 96.8 | Plus |
| t-RA | 1975 | CG12120-RA | 232..1219 | 10..1000 | 4365 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9218953..9219187 | 640..406 | 1160 | 99.6 | Minus |
| X | 23542271 | X | 9219253..9219365 | 405..293 | 550 | 99.1 | Minus |
| X | 23542271 | X | 9221210..9221313 | 294..191 | 520 | 100 | Minus |
| X | 23542271 | X | 9218773..9218886 | 762..650 | 505 | 98.2 | Minus |
| X | 23542271 | X | 9221415..9221510 | 191..96 | 480 | 100 | Minus |
| X | 23542271 | X | 9222939..9223026 | 97..10 | 425 | 98.9 | Minus |
| X | 23542271 | X | 9218588..9218700 | 879..767 | 400 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:11:39 has no hits.
UFO06481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:19 Download gff for
UFO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 225..1148 | 1..926 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:40:52 Download gff for
UFO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 225..1148 | 1..926 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:10 Download gff for
UFO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| t-RA | 225..1148 | 1..926 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:10 Download gff for
UFO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9218482..9218529 | 880..926 | 91 | <- | Minus |
| X | 9218588..9218704 | 762..879 | 94 | <- | Minus |
| X | 9218774..9218894 | 641..761 | 97 | <- | Minus |
| X | 9218953..9219187 | 406..640 | 99 | <- | Minus |
| X | 9219253..9219363 | 295..405 | 99 | <- | Minus |
| X | 9221210..9221313 | 191..294 | 100 | <- | Minus |
| X | 9221416..9221509 | 97..190 | 100 | <- | Minus |
| X | 9222940..9223033 | 1..96 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:40:52 Download gff for
UFO06481.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9115243..9115346 | 191..294 | 100 | <- | Minus |
| arm_X | 9115449..9115542 | 97..190 | 100 | <- | Minus |
| arm_X | 9116973..9117066 | 1..96 | 94 | | Minus |
| arm_X | 9112515..9112562 | 880..926 | 91 | <- | Minus |
| arm_X | 9112621..9112737 | 762..879 | 94 | <- | Minus |
| arm_X | 9112807..9112927 | 641..761 | 97 | <- | Minus |
| arm_X | 9112986..9113220 | 406..640 | 99 | <- | Minus |
| arm_X | 9113286..9113396 | 295..405 | 99 | <- | Minus |
