UFO06482.5prime Sequence
1116 bp (998 high quality bases) assembled on 2009-08-18
> UFO06482.5prime
CAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGGATTCGCGG
GAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTGGTCACGCT
GGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTCCAGTGGCG
ACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCTTGCCCCGT
CTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGCTCGAATGC
AATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGTCACCCTGA
TAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAATCGCTGCTC
ACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGTGGCACCAA
CTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAACCCACTTTC
CGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATCTGGGCGGT
AACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAAAGTCTGCA
TGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGAGGCGGTGG
GTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATCTGATCGAG
ATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCGCTGCTGCT
GCACAAGAACCGTCTGCGTCATCTTCCCAAGGACATCGTGGCACTGAAGA
ATCTGACTGAGCTGAGCCTACGTGACAATCCGCTGGTGGTGCGCTTCGTG
CAGGACATGGCGCTGAAGCCACCCACCCTCCTCGAGCTGGCTGGTCGCAT
GGTGAAAGGCCAGTGCCAGAGACCCGGACCCTATGACATCCCCAGGACAC
TGGGCCGAGTATTTGAACAGCGCCAATTGCTGCGTGAATCCCAACTGCAG
GGGCGTCTTCTTCGACACCCGGGTGGAGCACATCAAGTTCGTGACTTTTG
CGGAAGTACGTGTACCATTGCTGCAGTACTCTGCTCCTCAAGTGCATCGA
GCAGACAGCGGCGGCGCCGTGATCATCGGTCCGCGCACGCCAGCACGATC
ATGATGCCAAGGCCTG
UFO06482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32687-RB | 2803 | CG32687-RB | 837..1913 | 8..1077 | 5045 | 98.6 | Plus |
| CG32687-RA | 2352 | CG32687-RA | 386..1462 | 8..1077 | 5045 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10485711..10486247 | 544..8 | 2685 | 100 | Minus |
| X | 23542271 | X | 10483342..10483560 | 761..543 | 1095 | 100 | Minus |
| X | 23542271 | X | 10482946..10483242 | 1052..760 | 1070 | 95.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:03 has no hits.
UFO06482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:59 Download gff for
UFO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 377..1457 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:33 Download gff for
UFO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 382..1462 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:52 Download gff for
UFO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 382..1462 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:52 Download gff for
UFO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10482918..10483240 | 762..1077 | 95 | <- | Minus |
| X | 10483342..10483558 | 545..761 | 100 | <- | Minus |
| X | 10485711..10486251 | 1..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:33 Download gff for
UFO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10376951..10377273 | 762..1077 | 95 | <- | Minus |
| arm_X | 10377375..10377591 | 545..761 | 100 | <- | Minus |
| arm_X | 10379744..10380284 | 1..544 | 99 | | Minus |
