UFO06483.5prime Sequence
1092 bp (1001 high quality bases) assembled on 2009-08-18
> UFO06483.5prime
CAGTCGACATGCTCACTCCTTGCCTGCTGCTAGTCGCCACAGTCGCCAGT
TTCAGCCTCCACGCGCAGGCCATCCGGGTGGACTGGGGCACCAACACAGG
ACCCATAGCACCACCTCCGCCGCGCACCACTCCGCAGCCGCCGAGGAAAC
CATACCGGGATCCAGCGCCCGTCTGGGAGGACCAGAGCGATGACGTACCC
AACCCCAATCCCTATGTCTACGTGTTGCCACCGCCTTCGAGACCAAGGAC
CTGGGCGATTCCCGCCGGACCATATGCTCCGCCCAACTACAACAACCTGC
CGCCCAAGGGCAACAACTACGGCCAGCTGGCCAGCAATTCCTACAGCGGA
GGAGTGACCTCCGTGCCGGGACTGGCCGCCCAGTATGTGCCCGGAGTGGG
CATCAAGTATACGGCAATTGTGTCTGATAAGCTGCAGGGCAAATACAATG
CGAAGACCAAGAAGTACAAGGCCTATGAGAAGGCCAAGTACGCTTACCCC
TGGAACTATGTAAGGCAATACGAGAATCGAAAGCGATATCTGCGCTATGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATA
ATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGG
TCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACC
GAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTA
TCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCA
CTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGC
CATCACAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGT
CGCCTTGCGTATATATTTGCCCATGGTGAAACGGGGCGAGAGTTGTCCAT
ATGCCACGTTTAAATCAAACTGTGAAACTCACCCAGGATGCTGAAACGAA
AACATATCTCAATAACCCTTACATAGCAGTTTCACCGTACACGCCAATCT
GCAATATATGTGTAGAAACCTGCCGATCGCTTGGCATTCACT
UFO06483.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GV1-RB | 801 | CG12023-RB | 186..725 | 9..548 | 2700 | 100 | Plus |
| GV1-RA | 1196 | CG12023-RA | 186..686 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1821807..1822137 | 218..548 | 1655 | 100 | Plus |
| 3L | 28110227 | 3L | 1821213..1821426 | 11..224 | 1040 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:53:58 has no hits.
UFO06483.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:00 Download gff for
UFO06483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GV1-RB | 179..728 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:54 Download gff for
UFO06483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GV1-RB | 180..729 | 1..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:25 Download gff for
UFO06483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GV1-RB | 180..729 | 1..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:25 Download gff for
UFO06483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1821807..1822141 | 218..552 | 99 | == | Plus |
| 3L | 1821209..1821419 | 4..217 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:54 Download gff for
UFO06483.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1821209..1821419 | 4..217 | 98 | -> | Plus |
| arm_3L | 1821807..1822141 | 218..552 | 99 | == | Plus |
