UFO06484.5prime Sequence
1072 bp (968 high quality bases) assembled on 2009-08-18
> UFO06484.5prime
CAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGAATTTCAAG
GATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAAGTCTACCT
CAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAACATCACCA
CACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAACTGCCGGTG
GACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCCAACAATGA
GCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCTCCAGCAGC
TGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGCTAAGTGGT
TTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTTCGACGCCT
GCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAATGTGAGCG
ACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACCTGCCCATG
CTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTGCCGGCAGC
TCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACACCGCTATCA
ACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTTACGACAAC
CGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTGTTTTGGGT
CCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGGCACCCGCA
CAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTCGCTCTACGATGAC
TGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTATATGAGAA
TGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTCCCACATCA
ACATGGACCCATCGCCGCTGCACGAACTCCACCTGCTCAGATGTCTCTAT
ACCTCGTACTACTTCATGGTGGTGAAAGCGTGCAGTACATCAACAGCTCT
TCACCTGCACTTCTGCACCACGATGTGTTCTCTTTGTGACAGCAATGATA
GAGTACTACCAATTGGCTTGGC
UFO06484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11099-RB | 2173 | CG11099-RB | 258..1338 | 9..1072 | 4990 | 98.2 | Plus |
| CG11099-RA | 2319 | CG11099-RA | 404..1484 | 9..1072 | 4990 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20236638..20236968 | 9..339 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 20237693..20238002 | 671..977 | 1385 | 98.7 | Plus |
| 2R | 25286936 | 2R | 20237026..20237211 | 339..524 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 20237289..20237436 | 523..670 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:11:38 has no hits.
UFO06484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:04 Download gff for
UFO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1484 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:29:50 Download gff for
UFO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1484 | 1..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:06 Download gff for
UFO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1484 | 1..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:06 Download gff for
UFO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20236631..20236968 | 1..339 | 99 | -> | Plus |
| 2R | 20237027..20237209 | 340..522 | 100 | -> | Plus |
| 2R | 20237289..20237436 | 523..670 | 100 | -> | Plus |
| 2R | 20237693..20238004 | 671..978 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:29:50 Download gff for
UFO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16124136..16124473 | 1..339 | 99 | -> | Plus |
| arm_2R | 16124532..16124714 | 340..522 | 100 | -> | Plus |
| arm_2R | 16124794..16124941 | 523..670 | 100 | -> | Plus |
| arm_2R | 16125198..16125509 | 671..978 | 98 | -> | Plus |
