UFO06486.5prime Sequence
1016 bp (650 high quality bases) assembled on 2009-08-18
> UFO06486.5prime
CAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCATAACTCAACGTTC
AAGTCGCCATTCACTAACGGCAACTGCCAGTCAGCCACGCCCACTTCCGC
CCCCACATCCACCGCGGTGGGGACCCCCACCCTCAAGGATGTTGCTCCAC
GCCAGCTGACTCAAAACCACAACATCGCTGCCGCTGCCGTTGCCGAGGGT
GACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGCGGCCTGGG
CGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCCCCTGGATT
TGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGAGCGTGTTC
ACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGATTGGCCAA
GGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCTGTGCAAGT
TCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTATCGGCGAG
GAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCATCGGCATC
CGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCGATGGAGGCGGCCAAGG
TCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCGAGGCTCTG
CCCAAGATGACCGCCCAGGAGGGCGTGATCGCCTTCTAGAAGGGCCTGGT
GCCATTGTGGATGCGCCAGATCCCATACGCCATGGATGAAGTTCGCCTGC
TTCGAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCAATGCCAC
GTGCCGATTGCAGCTAAGGGTGAGCAGTTGGTGGTGACCTTCGTCGCCGA
TTACATTGCCCGGCGTGTGCTGCGGCATCGTCTCGCATCCGGCGGACACA
GTGATGTCCAAGCTGACCAGGCCAGGGTGCCTCCGCCCTGAACGTGCCAA
CAGCTGGGTTGTCTGGATTGTGGGGGCGATTGCTGCCAGCATCGTGATGA
TCGGAACATGAACGCC
UFO06486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9090-RC | 1265 | CG9090-RC | 38..1041 | 8..1009 | 4460 | 96.8 | Plus |
| CG9090-RB | 1339 | CG9090-RB | 112..1115 | 8..1009 | 4460 | 96.8 | Plus |
| CG9090-RA | 1385 | CG9090-RA | 158..1161 | 8..1009 | 4460 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20279423..20280166 | 946..201 | 3275 | 97.7 | Minus |
| 2R | 25286936 | 2R | 20280235..20280428 | 201..8 | 895 | 97.4 | Minus |
| 3L | 28110227 | 3L | 14538726..14539072 | 435..782 | 700 | 80.7 | Plus |
| 3L | 28110227 | 3L | 14538191..14538415 | 207..431 | 300 | 75.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:41:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 84..107 | 111 | 95.8 | Plus |
UFO06486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:16 Download gff for
UFO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 148..1166 | 1..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:53 Download gff for
UFO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 151..1169 | 1..1016 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:15:55 Download gff for
UFO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 151..1169 | 1..1016 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:15:55 Download gff for
UFO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20279401..20280165 | 202..965 | 97 | <- | Minus |
| 2R | 20280235..20280431 | 1..201 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:53 Download gff for
UFO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16166906..16167670 | 202..965 | 97 | <- | Minus |
| arm_2R | 16167740..16167936 | 1..201 | 95 | | Minus |
