UFO06488.5prime Sequence
1142 bp (1031 high quality bases) assembled on 2009-08-18
> UFO06488.5prime
CAGTCGACATGGCGGCCCAGACGATACTGTTTGATTTCACGCTGGACAAG
GACAAGACGGCGGATGAGGAGGCGCGCCTCCAGGTGGCCAAAATCCTGCG
TAACGAGCTGGAGCAGCTGTTCCCCCAGCTGGAGCTGGCCTACTCGATGG
AGTCGCCGGAAAACGGCTACTTTGCGGTGCTGCACGAGAACAAGGACACG
GTGATTACCTGCCGCATCTTCCAGCACGGCCTGCTGACGCTCAACGTGGA
GTACTTCCTGCCCGATGGCAAGGAGCCGAGCATATCCTTCGACAGCGGTA
AGAGCCTGGAGAATGTCCTGGCAATCAAACTGAAGGCCATCAAGGCCCAG
AAGCTGCCGACGCTGAAGCGCGGCGATGTCTCCAGGTACTTCCCATCGTC
AGATGAGCGCATCATCGAGTACGACATCGACAAGGTGGTCTTCGAGGCGC
GCTCGCCCTTCCAGAAGATTCAAATCATGCACTCCAAGACCCTGGGCAAC
ATGCTGCTCCTCGACGAGCTGCAGAACATTGCTGAATCCGATTTGATTTA
CACGGAGACCCTGATGTGTCGCGGCGTGGAGAACTACGAGGGCAAGGAGA
TCTGCATCCTGGGCGGCGGTGATGGCGCCTTGTTGTACGAGCTACTCAAG
GAGAATCCGAAGCATGTGGTGATGCTGGAGATCGATGAGCTTGTGATGCA
AACCTGCAACAAATACCTCAACGTGATCTGCGGCGATGTGCTGGAGAAAC
GCAAGGGCGATCAGTACGAGATCATTGTGGGCGACTGTGTGGAGTACTTG
AAGAAGTTCATCGCCGAGGGCCGCAAGTTCGACTACGTTTTTGGGGATCT
TACGGACATACCCATAACCGATGCCCCGGAGGCGAGACCTGGGATTTCAT
TCGTACCATCTTCGAGCACTCCTTTCAAGGTGCTGAAACCCGACGGAAAG
TATTTGACTCATGGCAATGGGTCCACCTGCAAGGTGCAGCTGCGTCTTAT
TCGAGGAGCAGTGAATTTGCTGGCGTCCCAAGGTGAAGTCACCCACCACC
AAGGGCGTTTGTGCGTCGTCATGGAAAGAGTGCTCTTCTACAGGTGACTT
CGCCCGCAAGCTTTTAGAAACATCGTTGGCGGCGGACCAGGT
UFO06488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4300-RC | 1980 | CG4300-RC | 78..1184 | 9..1112 | 5160 | 98.5 | Plus |
| CG4300-RB | 1980 | CG4300-RB | 78..1184 | 9..1112 | 5160 | 98.5 | Plus |
| CG4300-RD | 1983 | CG4300-RD | 471..1187 | 399..1112 | 3210 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12272514..12273041 | 1054..526 | 2360 | 98.5 | Minus |
| 3L | 28110227 | 3L | 12276890..12277174 | 293..9 | 1425 | 100 | Minus |
| 3L | 28110227 | 3L | 12273498..12273623 | 525..400 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 12274003..12274111 | 402..294 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:42 has no hits.
UFO06488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:15 Download gff for
UFO06488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 86..1199 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:16 Download gff for
UFO06488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 71..1184 | 1..1112 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:35 Download gff for
UFO06488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4300-RB | 71..1184 | 1..1112 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:35 Download gff for
UFO06488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12272449..12273041 | 526..1117 | 96 | <- | Minus |
| 3L | 12273498..12273620 | 403..525 | 100 | <- | Minus |
| 3L | 12274003..12274111 | 294..402 | 100 | <- | Minus |
| 3L | 12276890..12277178 | 1..293 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:16 Download gff for
UFO06488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12266598..12266720 | 403..525 | 100 | <- | Minus |
| arm_3L | 12267103..12267211 | 294..402 | 100 | <- | Minus |
| arm_3L | 12265549..12266141 | 526..1117 | 96 | <- | Minus |
| arm_3L | 12269990..12270278 | 1..293 | 98 | | Minus |
