UFO06489.5prime Sequence
1071 bp (963 high quality bases) assembled on 2009-08-18
> UFO06489.5prime
CAGTCGACATGAAGATGATACTTGCGCTTGTCGTCCTTGGACTGGTGCTG
GTCGCCGCCGAGGATAAGTACACCACCAAGTACGACAACATCGACGTCGA
CGAGATCCTGAAGTCGGACCGCCTCTTCGGAAACTACTTCAAGTGCCTGG
TGGACAACGGAAAGTGCACCCCGGAGGGCCGGGAGCTCAAGAAGTCCCTG
CCGGACGCCCTGAAGACGGAGTGCAGCAAGTGCAGCGAGAAGCAGCGCCA
GAACACCGACAAGGTCATTCGCTACATCATCGAAAACAAGCCCGAGGAGT
GGAAGCAGCTGCAGGCCAAGTACGATCCCGATGAGATCTACATCAAGCGC
TACCGCGCCACCGCCGAGGCCTCGGGAATCAAGGTGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTA
TAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGC
CACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGA
AAACATATTCTCATAAACCCTTTAGGAAATAGGCCAGGTTTCACCGTACA
CGCACATCTGCGAATATATGTGTAGAACTGCGAATCGTCGTGTATTCACT
CCAGAGCGATGAAACGTTCAGTGCTCATGGAAACGGTGTAACAGGGTGAA
CCCTATCAATCACCAGCTCACGTCTTTCATGGCCTCCGATCGGATGACAT
CATCAGCGGCAAGGATTAGCG
UFO06489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PebIII-RC | 836 | CG11390-RC | 333..710 | 9..386 | 1890 | 100 | Plus |
| PebIII-RB | 768 | CG11390-RB | 265..642 | 9..386 | 1890 | 100 | Plus |
| PebIII-RA | 586 | CG11390-RA | 83..460 | 9..386 | 1890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24027015..24027392 | 9..386 | 1890 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:52:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 1589..1626 | 57..94 | 118 | 78.9 | Plus |
UFO06489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:14 Download gff for
UFO06489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 96..477 | 9..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:16 Download gff for
UFO06489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..464 | 9..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:20 Download gff for
UFO06489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PebIII-RA | 83..464 | 9..391 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:20 Download gff for
UFO06489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24027015..24027392 | 9..386 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:16 Download gff for
UFO06489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19914538..19914915 | 9..386 | 100 | == | Plus |
