UFO06493.5prime Sequence
1122 bp (1006 high quality bases) assembled on 2009-08-18
> UFO06493.5prime
CAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAATCTATCAAG
ACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAAAAGGAGTT
CGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCAAGTTCTGA
TCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTCTCGCGGAG
GCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGCGATGTAAT
TGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGCCAAGGATG
CTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCCGCACCAGG
AATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCGGAGCTGAT
GAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAAGGCGCACT
CTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCACCGTTCGC
GGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTGGTTGCCAC
CTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGTTAACTCGC
TATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCCGAGTGAAC
AAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAGTTCGTCAA
GTTCCAGGAGGTCAAAATGCACGAGCACAGCGACCAGGTGCCCGTGGGCC
ACATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCACTCGAATG
GCCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTGCCACTAAT
GCGCACAGGTTTCGCTCAGATGATTCACGGTTTGCTCTCGGAGACATTCC
TTCAAGCTCACGCATCATCTGTATCAACAAGACGACGAGATTTCGACAGA
TGCCGAGCTGACTCCAGAAGAGCTGGAGATTGGCCCAGGATGACTTCTAC
GAGCGCTTGACACAGCTTGCACCGAATCTATGCATTGATGTTAAGAAGCG
CTGCTCTTGCCGTGTCGGAGGATGACAGCGGCCGATGCATGAAATCCTGC
AACTTACACTCTGCCTGTATGG
UFO06493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm7-RA | 2451 | CG4978-RA | 154..1262 | 9..1093 | 4945 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8892285..8892787 | 410..912 | 2485 | 99.6 | Plus |
| 3L | 28110227 | 3L | 8891842..8892213 | 38..409 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 8892854..8892958 | 911..1009 | 300 | 92.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:20 has no hits.
UFO06493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:11 Download gff for
UFO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 140..1229 | 9..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:17 Download gff for
UFO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 154..1243 | 9..1077 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:56 Download gff for
UFO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 154..1243 | 9..1077 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:56 Download gff for
UFO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8891749..8891779 | 9..39 | 100 | -> | Plus |
| 3L | 8891844..8892213 | 40..409 | 100 | -> | Plus |
| 3L | 8892285..8892786 | 410..910 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:17 Download gff for
UFO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8884849..8884879 | 9..39 | 100 | -> | Plus |
| arm_3L | 8884944..8885313 | 40..409 | 100 | -> | Plus |
| arm_3L | 8885385..8885886 | 410..910 | 99 | -> | Plus |
