UFO06495.5prime Sequence
1086 bp (994 high quality bases) assembled on 2009-08-18
> UFO06495.5prime
CAGTCGACATGAATCGGTCCGAACCGATTCCCATTCGACGGGACCGCTCT
TTTGACAGTGTGATCAACCGCCTGCTCCGTATGAGGTCCCAGAATCATGA
GAGCTTTCGCGCCGCCATGTACAATTTCCTGATCGCCGCAGGAGTTGCGG
CATTCGTCGCTGTGTGCTTCATTCTTGGGCCCTTCGTCCGTCCATTGCTG
TGGGCCTTCCTCATGGGCGCCGTGCTCTTTCCATTCAAGCGACGTTTGGC
GGAGAGCGTAAACAGTTGGTTTCACCGCTTGGAGGTGCGCGACTCCAATG
TACTGGTTTCGATCTGCCTATCGCCGCTGGAAGCCACAGAGCATTGCGGG
CGGTTGCTGATCGGGTGGCTCTGCGAACACTGGCAACTCCTCCTGGCCGG
ATGCGGAGTGGCCGGGTGCATTAAGCTGCTGGTTTTATATGCACCGAAGG
GTTTTCTGCTGGCCATCTGGCATTGGATCACCTTTTCCCATGGCTTGTTC
GTTCAAATTATTGGATTCCTCAACGTATACGTGCTCATTTCCTTGATCGT
GGTCTACTTGAGCTGCGTCCACTTCTTTTGGAGGCCAGAGAATAGTGCCC
ACTTCGTGGTCGCCGGACAATCCATGTGGATAGCTGTAGCGGGCTATCTG
AGTAGCTTTCTTGGCGCCCTGCAGGTGCCGGTATTTCTACTGGTTATGAC
CTATGTAACAGCATCTACGGCATATCATCTGCAAACCCTAGATGATTCGG
GATCTTATCTTCACCGCCTGCAAAAGTTGTTCGACAAGAACGATTTTGAG
CGATCGCTAAGCAACTTCAGCATTTGTGGCAGACCAGGCAACGAGCCACT
GAGTCCGGGGCTGCAGTCGGATGTGGAGGATGTATCGTTAAGTGACCACT
GTCGACTCGACGGACACGTTTGATGTCAAGCCAGAAACGGAGGTTCCCAG
TCACCAGAGCGACACATTCTTTAAGCTCCTTTTTTTATGCTGCTGGCACA
TTCTTCTATCGCAACGTGTGGATGTTTTATTCTAGCGGCATTCCAGTATT
TTGCATCTATTACCGGTAGAAAGAATACGAATACTA
UFO06495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2698-RI | 3147 | CG2698-RI | 262..1313 | 9..1058 | 5025 | 98.9 | Plus |
| CG2698-RH | 2976 | CG2698-RH | 262..1313 | 9..1058 | 5025 | 98.9 | Plus |
| CG2698-RG | 3138 | CG2698-RG | 262..1313 | 9..1058 | 5025 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8001922..8002458 | 9..545 | 2640 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8002553..8003064 | 533..1044 | 2300 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:50 has no hits.
UFO06495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:18 Download gff for
UFO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RB | 256..1307 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:53 Download gff for
UFO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RG | 254..1305 | 1..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:58 Download gff for
UFO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RG | 254..1305 | 1..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:58 Download gff for
UFO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8001914..8002446 | 1..533 | 99 | -> | Plus |
| 3R | 8002554..8003057 | 534..1037 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:53 Download gff for
UFO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3827636..3828168 | 1..533 | 99 | -> | Plus |
| arm_3R | 3828276..3828779 | 534..1037 | 98 | -> | Plus |
