UFO06501.5prime Sequence
1116 bp (1019 high quality bases) assembled on 2009-08-18
> UFO06501.5prime
CAGTCGACATGAGGACAAGTGAACAGAAAAGTAGCTGGCATTACTCGCAA
CCGAAACGGATTCGGGAACCCAGCCACCTGGACGAGCAGCACTTGCACCT
CGCCCACTGTCCGCGCCGGTCGATGAGAGCTTCACTGGGATTGGGCAGAA
CGCGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCT
GTGCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGA
TTTGCTCTACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCT
GCTATCACATGTGCCGCAAGCCCATCTCCGTAGTCAAGTCGGTGCTGCAA
GGAAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGTGGATATGC
GCCCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGG
CCTTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCG
GAACGCGTTTCCCTGCGATACTTCTTGTCCATGGGCATGATCCTCACCGG
AGTGTTCACTTACATGTTCGGCATTGCTCGCACCTCCAATATCCATAGTT
TGTGGTATTTCATAATAGTGCAAATATTCGCTGGCATCTTCCAGACGACC
GGATGGCCAGGTGTAGTGGCCCTCGTGGGTCGTTGGTTTGGAAAGTCGAA
ACGCGGGCTCATTTTTGGTATATGGAACAGTCATACGTCTATTGGAAACA
TTCTTGGCACGCTGATAGCGGCGCATTATGTGGAATCCGATTGGGCGCTG
TCGTTTGTGGTACCCGGCATTATCATTGCAGCCGTTGGATTTTTACTCTT
CCTTTTCCTAGTGGATCAGCCCGGAGATTGTGGGCTGTTATCCACAAGCC
GGACAGCATGAGCGTCGCGTGGCCAACGAGTCTGATGTGAACAGGACGAC
GAGGAGCAGTGCGCATACGATGCGAAATCACTATAGATCTGCTCCCACGA
CGTACTCATCATCACGATCTCAACAGAGGCGGTGCAGGGGTCGCGACGTC
AATCAGTCTGATCGATGCCTAATTCATACGGGGTGTAGAGTTTGCTGATG
TTTGACAGCGTGTGAC
UFO06501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS16-RB | 2399 | CG10069-RB | 246..1339 | 9..1086 | 4965 | 97.8 | Plus |
| MFS16-RD | 2281 | CG10069-RD | 150..1221 | 31..1086 | 4855 | 97.8 | Plus |
| MFS16-RC | 2563 | CG10069-RC | 432..1503 | 31..1086 | 4855 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21283542..21284093 | 408..959 | 2665 | 99.6 | Plus |
| 2R | 25286936 | 2R | 21282987..21283212 | 31..256 | 1130 | 100 | Plus |
| 2R | 25286936 | 2R | 21283331..21283482 | 257..408 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:17 has no hits.
UFO06501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:08 Download gff for
UFO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10069-RB | 167..1260 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:15 Download gff for
UFO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS16-RB | 246..1339 | 9..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:23:55 Download gff for
UFO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS16-RB | 246..1339 | 9..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:23:55 Download gff for
UFO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21282543..21282564 | 9..30 | 100 | -> | Plus |
| 2R | 21282987..21283212 | 31..256 | 100 | -> | Plus |
| 2R | 21283331..21283482 | 257..408 | 100 | -> | Plus |
| 2R | 21283543..21284111 | 409..974 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:15 Download gff for
UFO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17170048..17170069 | 9..30 | 100 | -> | Plus |
| arm_2R | 17170492..17170717 | 31..256 | 100 | -> | Plus |
| arm_2R | 17170836..17170987 | 257..408 | 100 | -> | Plus |
| arm_2R | 17171048..17171616 | 409..974 | 99 | -> | Plus |
