UFO06502.5prime Sequence
1079 bp (982 high quality bases) assembled on 2009-08-18
> UFO06502.5prime
CAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTGTTCTGCCC
CTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCACAGGCTCA
GGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGACACCATAA
CGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCCACACTTTG
GCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGTCCTTCGCC
CAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAATGCCACTG
CTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTAGCACCACT
ACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACCACAAAGAG
AACCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGCCACAGACCA
AGCGACCTGCCACTAGCTCCACCACAAAAGCCACTGTGGCCACCACAAAG
AAACCGAGCACCACCAAGAAAGTGGCTACGGCCAAACCCAAGGACAAGGA
GGAGGCCACCAAGGCCGATGATGCAAACAAAGACTGCACTGGAGTTTGCG
TGGCCGATCGCATAGCGGAGTACTGTGAGGCCTATTTGACCAGCGATGGA
CTGTGCAAGGAAGGCACCAAGTGCTGCGTCTCCCTGGATGAGTATTCCAA
TGGCAAGCTGCCCAAGGATATCTATATTCCAGCCAAACATATGAGCAACT
TGAAGCCCAACCAGACGCTGTCCGAAAAATCGGCTCCCGCCAAGAGTTCC
AGTACGTCCACGACGTCCACTACTACCACCACCAGCACTACCACACACCC
GAACCGGCTAGAATAAACAACAGTTCTCCGAAGCCCACCAAACACAGAAG
CATCCGACCACCACACGACGAGCAGCCGAGGAGAGAGAGCAGAGACGAGA
GATGCGAGAGAGAGCCACCACTGACACAGCTGAGTCGACAGTCAGGTCAG
TGTGAGATGCAGGCGATGCATGATGAATTTGCATCTCTGGATGACTCGAT
CGATGCCTTCTGTACGGAAGAAGCTGTTA
UFO06502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RB | 3657 | CG15002-RB | 185..1113 | 9..932 | 4520 | 99.5 | Plus |
| mas-RC | 3654 | CG15002-RC | 185..1110 | 9..932 | 4465 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4164885..4165183 | 579..281 | 1495 | 100 | Minus |
| 3L | 28110227 | 3L | 4164403..4164584 | 915..736 | 810 | 98.9 | Minus |
| 3L | 28110227 | 3L | 4164644..4164799 | 735..580 | 780 | 100 | Minus |
| 3L | 28110227 | 3L | 4165243..4165394 | 282..131 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 4165463..4165588 | 134..9 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:51:40 has no hits.
UFO06502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:08 Download gff for
UFO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 182..1090 | 9..915 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:57:07 Download gff for
UFO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..1093 | 9..915 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:09 Download gff for
UFO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..1093 | 9..915 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:09 Download gff for
UFO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4165465..4165588 | 9..132 | 100 | | Minus |
| 3L | 4165243..4165392 | 133..282 | 100 | <- | Minus |
| 3L | 4164403..4164584 | 736..915 | 98 | <- | Minus |
| 3L | 4164644..4164799 | 580..735 | 100 | <- | Minus |
| 3L | 4164885..4165181 | 283..579 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:57:07 Download gff for
UFO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4164403..4164584 | 736..915 | 98 | <- | Minus |
| arm_3L | 4164644..4164799 | 580..735 | 100 | <- | Minus |
| arm_3L | 4164885..4165181 | 283..579 | 100 | <- | Minus |
| arm_3L | 4165243..4165392 | 133..282 | 100 | <- | Minus |
| arm_3L | 4165465..4165588 | 9..132 | 100 | | Minus |
