UFO06503.5prime Sequence
1149 bp (1057 high quality bases) assembled on 2009-08-18
> UFO06503.5prime
CAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCAGCAACTTT
GTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGATCAGGCCGA
ACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCGGCTGGACA
TCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATTACCAGGAG
CTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCGTCCAAGAA
GCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAACCATGCATG
ACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTAAGAATTAT
CGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAGCGGTACTC
GAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCAGAAGGAGA
TACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACAAGCAGCAC
AGCGGATTGCAACTCCAGCAGCTGCATGCTCAACTGCAGGATAGCGAGCA
GAGTCAATCCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGAGTACGAAC
TATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAAGACGGGAA
ACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGCGAAGAGGC
AAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTACAAGGAGG
AGATGACCCACCTAGCCTCCAATATCGGTACCATAATGGATGAGGCCTCC
ACACGCGTCGACGTTGAAGTGGGCCATCTGAAGAATATGCTCAAGCAAAA
GGACATTATAATTACCACCATAAAGGAGAAGCTGAAAAAACTGGCTGTCG
ATCATAAGTCGGTGGTGCACATGCTGGAGACCCGGAGCAATCGCCTGGAG
CAAAGTACAAGGAGTGCTGAAGCAGAACGATAAGCTGGGAGCCGAGTTGG
AGGCACTTGCCGGCGACTTGGCGAACTGGAGCGATCCGTTACTGAAGCTT
ACGGGGGGGATGCCGAAAATGCAGATAAATGTACTATAGTCTCAATGGAT
CGCTGCTATGAATCCAGAAATGAGGAGATTCCGAGCATGAGACTTCCGC
UFO06503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6569-RA | 1428 | CG6569-RA | 77..1183 | 9..1106 | 5260 | 98.8 | Plus |
| CG6569-RB | 1492 | CG6569-RB | 174..1247 | 42..1106 | 5095 | 98.8 | Plus |
| CG6569-RC | 782 | CG6569-RC | 77..452 | 9..384 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21866767..21867266 | 881..382 | 2500 | 100 | Minus |
| 3R | 32079331 | 3R | 21867403..21867746 | 385..42 | 1720 | 100 | Minus |
| 3R | 32079331 | 3R | 21866516..21866711 | 1072..880 | 770 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:02:21 has no hits.
UFO06503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:07 Download gff for
UFO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 261..1385 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:04 Download gff for
UFO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 77..1201 | 9..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:26 Download gff for
UFO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 77..1201 | 9..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:26 Download gff for
UFO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21866510..21866709 | 882..1074 | 94 | <- | Minus |
| 3R | 21866767..21867264 | 384..881 | 100 | <- | Minus |
| 3R | 21867405..21867744 | 44..383 | 100 | <- | Minus |
| 3R | 21867809..21867843 | 9..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:04 Download gff for
UFO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17692232..17692431 | 882..1074 | 94 | <- | Minus |
| arm_3R | 17692489..17692986 | 384..881 | 100 | <- | Minus |
| arm_3R | 17693127..17693466 | 44..383 | 100 | <- | Minus |
| arm_3R | 17693531..17693565 | 9..43 | 100 | | Minus |
