UFO06505.5prime Sequence
1120 bp (1016 high quality bases) assembled on 2009-08-18
> UFO06505.5prime
CAGTCGACATGTCGAACCTGTATGTGCTGTACGAGCATGCGGCGGGCTTC
TCGCTCTTCTCCGTCAAGGAGTTCGAAGAGGTGTCCATGTTCCTGCCCCA
GGTGGAGTCCTCGGTGACGGACCTCGCCAAGTTCAACTCAATTGTTAAGC
TGGCTGGATTTGCACCTTTCAAGACGGCCATTGCCGCACTGGAAAACATC
AATGCCATATCCGAGGGCATAGTGCCGCAGGATCTGCTCTCCTTCTTGGA
TGACTTCTTTGCCAAGCTGAAGAAGAAGAAGTGCACCCTGGGTATTGCGG
ATGCCAAGCTGGGAGCTGCAATCACCGAGGCCATTGGCGTCCAGTGCAGT
CACTTTGGAGTGGTTCCTGAGATTCTGCGCGGCGTGCGATTCCACTTCGC
TAAGCTGGTCAAGGGATTCACCGACAAGTCCGCTGGCGTTGCTCAGCTGG
GTCTGGGCCACAGCTACTCGCGTGCCAAGGTCAAGTTCAATGTTCATCGT
TCCGACAACATGATCATCCAGTCGATTGCTTTGCTGGATCAGTTGGATAA
GGACGTAAATACCTTCTCTATGCGGATACGCGAGTGGTACTCGTATCACT
TCCCAGAACTGGTCAAAATCGTTCCCGACAATTACATGTTCGCCAAGGCG
GCCAAGTTCATCAAGGATCGCAAGAACCTCACGCAAGACCAGCTGGAGGA
TCTTGAGAAGATCGTCATGGACTCCGCCAAGGCTCAGGCTATCATTGGTG
CCGCCAAGATGTCCATGGGCATGGACATCTCCATTGTTGATCTGATGAAC
ATTGAGCTGTTCGCAGAGCGCGTTGTCAAGCTTTCCGAGTACCGAAAGAA
ACTGTCTACCTACTTGCACAACAAGATGAACTTGGTGGCACCCAATCTGC
AGTCTTTGATTGGCGACCAGGTCGGTGCCCGCCTGATATCGCATGCCGGC
AGCTTGACTAATCTGGGCAAGTACCCAGCATCTACAGTACAAATCCTGGG
TGGCGAGAGGCGCTCTTTCGGTGCTTCTAAGACCGCTCAATACGCCCAAG
TATGGTCTTATCTATCACTCCCTCGTCATGTCAACTGCTGAGAAACAGTC
GCCATCTCTCGAATCTGGCC
UFO06505.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop56-RA | 1746 | CG13849-RA | 110..1177 | 6..1071 | 5140 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22419664..22420323 | 1071..414 | 3000 | 98.3 | Minus |
| 3R | 32079331 | 3R | 22420387..22420791 | 415..11 | 2025 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:31 has no hits.
UFO06505.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:06 Download gff for
UFO06505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1185 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:38 Download gff for
UFO06505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1185 | 1..1079 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:59:20 Download gff for
UFO06505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop56-RA | 106..1185 | 1..1079 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:59:20 Download gff for
UFO06505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22419656..22420322 | 415..1079 | 98 | <- | Minus |
| 3R | 22420388..22420796 | 1..414 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:38 Download gff for
UFO06505.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18245378..18246044 | 415..1079 | 98 | <- | Minus |
| arm_3R | 18246110..18246518 | 1..414 | 98 | | Minus |
