UFO06506.5prime Sequence
1148 bp (1056 high quality bases) assembled on 2009-08-18
> UFO06506.5prime
CAGTCGACATGGATGAAAAAGATAAAGCTCAACACAACATGATATCCAAC
CTACCACTTTTGTTTGCGAACGGATATCCAACATCCCTAGAAAAAATTAC
GGAGTCCCAGTTAGAAAATTTTATTCCCTTCATGGTGCAATGCTCTTTAG
GACACATAAACTTACCAAAGAAAATAGATTGCAGTGAACCAGAATGGTGG
CCCGAAAGCGCTCCTTTCGAGATTCCGCTCAAAAAGCCGAAAGCATTTGT
TGGGAATTGGATGGAAAAAATGAAAGAAATTGTGGTTATATGCTATCAAT
TTCACAAAAGCTTATTTCTATTAAGATTTTGTAATGATTTAGCTGCGTAT
GAACACGCGAGCTTAAGATTCATAAACAATTATAACTCAACAACTTCATT
GTATGACAGGAGAAACAACAAACTGTTGGTTACATTTCGAAATGAAAACA
TGTCATATGATAGACAACAAAAGAACAGAAAGTGCTTGTTGCTGCAAAAG
AACAACAGTTCCATTAGCGAAAACGTACAGCATATGATGGTTGAGCCACC
ACCTTTTGATATCTACCTATGTGACAACTGTGATGCCGAACTTTATTCTA
AAGAAGCTATACTCGAACACGAAAACATTTGTTGCATGGAGGATGACGTT
ATACTTTGTGATTCCCCTGAGCCAGATAACAAAAGTGATGGGAAAAACGA
AGATATCGAACAGCGCAACGCCTTTCTCTTAAACTTTAAACTGCAACCCA
AATTCTCCGATAATAGTTTATCTAAAGAGAAACAGAAAACATATTCATTC
AGCGAAGAAACATCAACGGAAACATCAAACAGAAAGAGGCGTTTACCATC
GCGGAGAAATCGAACAGTTCATTCGTTTAGTAGTGTTCGTTTATCCCAAT
ATCATCACCTGCAGGACAGCAATTGTTAAAATCGACAAAACAAACAATAT
CAATGGATTATATTGCGGAAAGACAGGAACGCCTGGAACGCTTTTGTTAC
ACCTCCATTGATCAATAAATCAAATACCAAGCAAAAGTATTTGAAAAAAA
AACAAACCACTACAGTGCCATTGTACATTTAAAAGTCAATGAACACATTA
TCCATTAATCCTTCCGCGGCGTCATTGGTAAGCAGGACTACTGGAACC
UFO06506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 2388 | CG5694-RB | 416..1536 | 9..1124 | 5330 | 98.9 | Plus |
| CG5694-RA | 2132 | CG5694-RA | 160..1280 | 9..1124 | 5330 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10228658..10229126 | 1084..615 | 2130 | 98.3 | Minus |
| 2L | 23513712 | 2L | 10229705..10229950 | 254..9 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 10229414..10229612 | 452..254 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10229184..10229347 | 615..452 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:45 has no hits.
UFO06506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:05 Download gff for
UFO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 405..1549 | 1..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:35 Download gff for
UFO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 151..1296 | 1..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:18 Download gff for
UFO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 151..1296 | 1..1136 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:18 Download gff for
UFO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10229185..10229346 | 453..614 | 100 | <- | Minus |
| 2L | 10229414..10229611 | 255..452 | 100 | <- | Minus |
| 2L | 10229705..10229958 | 1..254 | 99 | | Minus |
| 2L | 10228596..10229126 | 615..1136 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:35 Download gff for
UFO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10228596..10229126 | 615..1136 | 96 | <- | Minus |
| arm_2L | 10229185..10229346 | 453..614 | 100 | <- | Minus |
| arm_2L | 10229414..10229611 | 255..452 | 100 | <- | Minus |
| arm_2L | 10229705..10229958 | 1..254 | 99 | | Minus |
