UFO06508.5prime Sequence
1127 bp (1016 high quality bases) assembled on 2009-08-18
> UFO06508.5prime
CAGTCGACATGGCCGACAATTTGGAGCCCCTGGAGCCCAGCCTGCAGAAT
CTCGTCGAGCAGGACTCCCTCAAGTGGATCTTCGTGGGCGGAAAAGGCGG
CGTGGGCAAGACGACTTGCAGTTCTAGCCTAGCCGTTCAGCTGTCGAAAG
TGCGCGAATCCGTGCTAATCATATCCACAGATCCGGCGCACAACATATCG
GATGCATTCGATCAGAAGTTCACCAAGGTGCCGACAAAGGTAAATGGCTT
TGACAACCTGTTCGCCATGGAAATCGATCCAAATGCCGGTCTCAACGAGC
TGCCCGAGGAGTACTTCGATGGCGAAAATGAGGCGCTGCGCGTGAGCAAG
GGCGTCATGCAGGAGATGATCAACGCCCTGCCCGGCATCGACGAGGCGAT
GAGCTATGCAGAGGTTATGAAGCTGGTCAAGGGCATGAACTTCTCGGTAG
TCGTCTTCGACACGGCGCCCACGGGACACACGCTGCGTCTGATTGCATTT
CCCCAGGTGGTGGAGAAGGGGCTGGGCAAGCTGCTGCGGCTCAAGATGAA
GGTGGCGCCCCTGCTGTCACAGTTCGTCTCCATGCTGGGCATGGCTGATG
TGAACGCTGACACACTCTCCCAGAAGCTGGACGACATGCTGCGCGTTATC
ACCCAGGTCAACGAGCAGTTCAAGAACCCAGATCAAACTACATTCGTCTG
CGTGTGCATAGCAGAGTTCTTCTCGCTGTACGAGACGGAACGACTTGTGC
AAGAGCTAACCAAGTGCGGCATCGACGTCCACAACATCATTGTAAACCAA
CTGCTGTTTCTGCAGAACTCGCACGACTCGTGCAGCATGTGCGCCTCCCG
CTTCAAGATTCAGAGAGTACCTGGACCAGATTGCCGACCTGTATGAGACT
TCCACGTAACCAGTTGCCGCTCCTCGAGAAGAGGTGCGCGGTCCAGAGAG
CATCCGTTCTTTCTCGAGAACTTATGAGTCCTACACCCAGGGCGAGCCCA
GGAGCAGCTTTCTAGACATTCGTTTGGCGCGCGCGGCCAGGTATTGTCCT
TATCTTATTCATAATCATAATCCTTATCCCACTAGCTAGGAGATTCTGGG
TTGACATGCCTTGATTCCCACATACAA
UFO06508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:50:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1598-RA | 1259 | CG1598-RA | 107..1109 | 9..1000 | 4735 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:50:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7538771..7539214 | 681..238 | 2220 | 100 | Minus |
| 2R | 25286936 | 2R | 7538423..7538712 | 965..681 | 1205 | 97.6 | Minus |
| 2R | 25286936 | 2R | 7539295..7539416 | 241..120 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 7539478..7539590 | 121..9 | 565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:50:07 has no hits.
UFO06508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:49 Download gff for
UFO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 107..1117 | 9..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:36 Download gff for
UFO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 107..1117 | 9..1007 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:20:30 Download gff for
UFO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 107..1117 | 9..1007 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:20:30 Download gff for
UFO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7539478..7539590 | 9..121 | 100 | | Minus |
| 2R | 7538423..7538712 | 681..965 | 98 | <- | Minus |
| 2R | 7538772..7539212 | 240..680 | 100 | <- | Minus |
| 2R | 7539297..7539414 | 122..239 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:36 Download gff for
UFO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3425928..3426217 | 681..965 | 98 | <- | Minus |
| arm_2R | 3426277..3426717 | 240..680 | 100 | <- | Minus |
| arm_2R | 3426802..3426919 | 122..239 | 100 | <- | Minus |
| arm_2R | 3426983..3427095 | 9..121 | 100 | | Minus |
