UFO06510.5prime Sequence
1105 bp (1008 high quality bases) assembled on 2009-08-18
> UFO06510.5prime
CAGTCGAACATGCTACTTTTAAATAAAAACCGAGTGATTTCTTTGGTCGT
TAATTTTATTTTTCTTATCATTCTCATTTCATCGAGTGTCCAAGCGGATG
AGAGAAACATTAACAAGCTGCTGAACAACCAGGTGGTGGTCAGCCGCCAG
ATTATGTGCATCCTGGGCAAGAGCGAATGCGACCAACTGGGACTTCAACT
CAAAGCTGCCCTGCCAGAAGTTATAACCAGGAAATGCAGGAACTGCTCCC
CACAACAGGCTCAAAAAGCGCAAAAGCTGACCACATTTCTGCAAACTAGA
TACCCGGACGTATGGGCCATGCTTCTAAGGAAGTACGACAGTGCCGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCA
TGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAG
CGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCA
ACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTC
ATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCAT
CACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCG
CCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTC
CATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGG
CTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGG
TTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCG
GAAATCGTCGTGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTC
ATGGAAAACGGTGTAACAGGGTGAACACTATCCATATCACAGCTCACCGT
CTTTTCATTGCATACGAAAATACCGATGAGACATCATCAAGCCGGCCAGA
TGTGAATAAGGCGGATTAAACTTGTGCCTTATTTTCTTACGTCCGTTAAA
GCCGT
UFO06510.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30172-RB | 756 | CG30172-RB | 263..598 | 10..345 | 1680 | 100 | Plus |
| CG30172-RA | 431 | CG30172-RA | 38..373 | 10..345 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24030970..24031165 | 205..10 | 980 | 100 | Minus |
| 2R | 25286936 | 2R | 24030704..24030845 | 345..204 | 710 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 230..289 | 911..970 | 128 | 72.1 | Plus |
UFO06510.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:10 Download gff for
UFO06510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30172-RA | 37..375 | 10..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:10 Download gff for
UFO06510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30172-RA | 38..376 | 10..349 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:30 Download gff for
UFO06510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30172-RA | 38..376 | 10..349 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:30 Download gff for
UFO06510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24030704..24030843 | 206..345 | 100 | <- | Minus |
| 2R | 24030970..24031165 | 10..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:10 Download gff for
UFO06510.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19918227..19918366 | 206..345 | 100 | <- | Minus |
| arm_2R | 19918493..19918688 | 10..205 | 100 | | Minus |
