UFO06512.5prime Sequence
1088 bp (974 high quality bases) assembled on 2009-08-18
> UFO06512.5prime
CAGTCGACATGATCAGCAGCCTGTTTTCGCGGCTTATAATATTGTTCTGC
GGCACCCTGTACCCGGCATATGCCTCATACAAGGCCGTCAGGACCAAGGA
TGTCAAGGAATATGTTAAATGGATGATGTACTGGATTGTCTTTGCATTTT
TCACCTGCATAGAAACATTCACGGACATATTTATCTCCTGGCTACCGTTC
TACTACGAGGTGAAGGTGGCCCTGGTGTTCTGGCTCCTCTCGCCGGCCAC
AAAGGGCAGTTCGACTTTGTATCGCAAATTCGTGCATCCTATGTTGACGC
GCCACGAACAGGAGATCGACGAGTACGTGAATCAGGCCAAAGAGCGCGGC
TATTCGGCGGTCCTGCAGCTGGGCTCCAAGGGAGTAAACTATGCCACCAA
TGTCCTCATGCAGACGGCCATCAAGACCTACGCGCTGACTACGGCGCCAT
CTGGCCATGGACGCGGCCTGCAAAACTCCCATTCGGCCGATGAGCTGTAC
AGGGGCCAGGATACGATGGACAGCACGGAAAACTGGCTGCCGCGAGCCAG
TTCCTTGAGCAGCATCGAGAGCTACACAGAGACGATCTACGAGCCGAGGA
CCGAGACCAAGCGACTGGTTATTCGAGAGGTTAGCGAGGAGGCGGAGTTC
GATGATGATCCCCTGGGCGATGCCGGAGCAGCCCGTCTCCGGGACATGCC
CGTCCGGAAGGCACAACCACGTCGGGCTGCTAGCACTGCCAAGGCTGCAG
GCAAACGCGGCCAGAAACACAACGATATTGAGGGCGCCAGGAGCTCCAGC
AGCTCCAGCAATGTGATCCGCTCCCGCCGCAAGCTGCGCGAACCCACGCC
CGATGTGGATGTGGAAAACTACGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAGTGGTCATATCATATCATATCATATCATATCACACT
AGCCTAGAGATCCTGGTCATGACTAGTGCTGATCTCACAATAAAAACGCC
GCGCACGAGCGTTCTGAACAATCGATGGAGTTCTGAGTCATACTGGATCT
ATCACTGGAGTTCAAGCCGAGCTCGAATACCAATGCTG
UFO06512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42678-RG | 2534 | CG42678-RG | 475..1338 | 9..872 | 4320 | 100 | Plus |
CG42678-RE | 1469 | CG42678-RE | 411..1274 | 9..872 | 4320 | 100 | Plus |
CG42678-RD | 1573 | CG42678-RD | 547..1378 | 41..872 | 4160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22929086..22929534 | 424..872 | 2245 | 100 | Plus |
2R | 25286936 | 2R | 22927250..22927448 | 114..312 | 995 | 100 | Plus |
2R | 25286936 | 2R | 22927513..22927629 | 309..425 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22927099..22927173 | 41..115 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:56:49 has no hits.
UFO06512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:29:09 Download gff for
UFO06512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30193-RA | 388..1271 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:34 Download gff for
UFO06512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 403..1286 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:31 Download gff for
UFO06512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42678-RE | 403..1286 | 1..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:31 Download gff for
UFO06512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22927099..22927171 | 41..113 | 100 | -> | Plus |
2R | 22927250..22927447 | 114..311 | 100 | -> | Plus |
2R | 22927516..22927629 | 312..425 | 100 | -> | Plus |
2R | 22929088..22929546 | 426..884 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:34 Download gff for
UFO06512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18814622..18814694 | 41..113 | 100 | -> | Plus |
arm_2R | 18814773..18814970 | 114..311 | 100 | -> | Plus |
arm_2R | 18815039..18815152 | 312..425 | 100 | -> | Plus |
arm_2R | 18816611..18817069 | 426..884 | 98 | | Plus |