UFO06513.5prime Sequence
1074 bp (1003 high quality bases) assembled on 2009-08-18
> UFO06513.5prime
CAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGCTGGCGGTG
GACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGTAGTAATCA
TCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAAGGCCGCAC
CCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGATCGGGAACC
CTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAACCCCGCCAT
CAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTATGCGGCGG
TGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGGTGAACTTT
GGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCAACCAAAGA
CTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAAAAACACAA
TGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGGACGGAGGA
GGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCGTCGGTCAG
CACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACAGGCGCTGC
AACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGTCCCGGGCG
AGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCACCACCAGCA
GCAGCACCATCACCACCACCACCATCACCACCTCACGGCAGCGGGTTGTA
CGGGCGGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGATCCTGCAAG
GCGAAGAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGCCAGCTATT
GCCCATCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGCCACATTAA
TAGTTTACATGAAACGACAAAGATTCGCCATCAGCAGTTTCGGCTAAACA
TGTCGCGCGACTACGAGCTGAATGTGTTGCGCAAGACGATCCCGCACTCA
TTGATTTCTGCGCAGAATCACATGGCAAGTACTGGCAAGCGTCGCCAAGT
CGCGGCAACGACTCAATGGCGTGG
UFO06513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-RA | 2267 | CG4385-RA | 227..1286 | 8..1057 | 4975 | 98.6 | Plus |
| S-RB | 5206 | CG4385-RB | 1048..2107 | 8..1057 | 4975 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:56:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1061244..1062147 | 911..8 | 4520 | 100 | Minus |
| 2L | 23513712 | 2L | 1052965..1053053 | 1008..921 | 380 | 97.8 | Minus |
Blast to na_te.dros performed 2014-11-28 18:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2510 | 584..744 | 151 | 58.8 | Plus |
UFO06513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:48 Download gff for
UFO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RA | 220..1256 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:32 Download gff for
UFO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RB | 1041..2077 | 1..1032 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:30 Download gff for
UFO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RB | 1041..2077 | 1..1032 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:30 Download gff for
UFO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1052938..1053053 | 921..1032 | 94 | <- | Minus |
| 2L | 1061234..1062150 | 1..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:32 Download gff for
UFO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1052938..1053053 | 921..1032 | 94 | <- | Minus |
| arm_2L | 1061234..1062150 | 1..920 | 99 | | Minus |
