UFO06515.5prime Sequence
1095 bp (991 high quality bases) assembled on 2009-08-18
> UFO06515.5prime
CAGTCGACATGTCGATGGATCCATCGGTTTCTCTAGAGGATCTGGAGCGA
CGTCGTCGTCGCGCCAGTTCCGCCCGCAAGCAGTCACATACTCCCCAGCC
AGCATCTCACCTGGCGGATTCGGAGGCCATGGCCGTAATCAATGAGATAT
TTAATCCCACGCTGAAGCTGCCGGAGTCCAGTGGCCACTATACGCTGCCC
GAGGAGATGAGGGCCGATGATAATGTGGCGCCCCATGAACTGGACATTGC
CAAGCTGGCGGAGCTGAAGGAAGTCTTCTCGCTCTTCGATACGGACTGCG
ATGGACTGATCTCGAAGGATGATCTACGGTTCACCTACACGGCGCTGGGC
AACGAACCGAACGAACAGCTACTGGAACAGATGATGCAGGAGGCCAAGGA
GCCGCTCGACTATGAAGCCTTCGTTCGGCTGATGAGTCGTCGCACCCAGG
AACTGGATCCCGAGGATGTTTTGTTGGAGGCCTGGAGCAAATGGGATGAC
CATGGCACGGGCAAGATCGACGAACGCAAGTGGGTGCTACCGGGTAGAGT
GGACTACCACAGTGATAGTCTCCATTTTGAACACTCCCCAGAATCTATGA
AGAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGT
GGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACT
GGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGC
CCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACA
TGAAGCCATCACAAACGGCATGATGAACCTGAATCGCAGCGGCATCAGCA
CCTTGTCGCTTGCGTATAATATTTGACCATGTGAAACGGGGGCGAGAGTG
TCATATGCCACGTTTAATCAACTGGTGAAACTCACCCAGATGGCTGAACG
AAAAACTATCTCAATAATCGTAAGCAAATAGCCAGGCTTCACGTA
UFO06515.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33098-RC | 902 | CG33098-RC | 32..628 | 9..605 | 2985 | 100 | Plus |
| CG33098-RF | 1182 | CG33098-RF | 165..685 | 9..529 | 2605 | 100 | Plus |
| CG33098-RE | 1169 | CG33098-RE | 152..672 | 9..529 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12387979..12388311 | 273..605 | 1665 | 100 | Plus |
| 3R | 32079331 | 3R | 12387705..12387928 | 51..274 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 12387596..12387637 | 9..50 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:53 has no hits.
UFO06515.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:28:45 Download gff for
UFO06515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RC | 24..637 | 1..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:44 Download gff for
UFO06515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RC | 24..637 | 1..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:11 Download gff for
UFO06515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33098-RC | 24..637 | 1..612 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:11 Download gff for
UFO06515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12387588..12387637 | 1..50 | 94 | -> | Plus |
| 3R | 12387705..12387926 | 51..272 | 100 | -> | Plus |
| 3R | 12387979..12388320 | 273..612 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:44 Download gff for
UFO06515.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8213310..8213359 | 1..50 | 94 | -> | Plus |
| arm_3R | 8213427..8213648 | 51..272 | 100 | -> | Plus |
| arm_3R | 8213701..8214042 | 273..612 | 98 | == | Plus |
