UFO06518.5prime Sequence
1137 bp (1047 high quality bases) assembled on 2009-08-18
> UFO06518.5prime
CAGTCGACAATGTCCATCTATTTGTTATGTTTGACAACAAACGGCGGATT
GCCAGTGTTTACACGAAAGAAGGGAGAATGCGAAAATCTGCCCTTCTCGA
CGGTGGCCTCCTTAAACGGCTTTCACATGTTCTTTAAGTCGCTGGGAATC
CAACTGGAGGCCACGACGACCAGCAAACAGCAGCCTATCCAGAATCAGGC
TCCCGCGGATGCCGAGGAGTGGACTTACATATGGCGCGACCGGGAATCCA
TCACCCTGATCGTGTGCGGCTGCGGTGTTGGGTCGGAGCAACTGCTTCAG
ACGCTGGCTGATCTTGTCTTTGGAGCGATAGGCATGTTCATTACCCGGGC
CGCAGAAATGGCACATGCAACGCTCCTCGATAGACTGAAGAAGGACGCCA
AGAAGTATGTCCCGATTGTTGACGCTATTCTGGAAGCCGCCTGTGCGGGT
ACACAACTCCTGGGCTACACGGACTGTCTGCTGGCGGCGGAAAACGCCCA
GCTGCTGCAGTGTCTAAATGAATTTAGTGGCCACTGTGGCTCGCTCTTTT
GCTGCCTGGTTGTGGGACACCGTATCGCTGTGGCCACTGAGGGCTGGTGG
GATCTGGACACTCGGGACCGCGAGCTGCTGCTGTTTCTGTTGAATTCGTC
GAGCACAATGCAACACGATGTGCCGGTCTATTTGCCCGTGAAAAGTCCCC
ATATAGCCTACCGCTTTGTCAGTATTCCTGTGGCGTCGAACAGTGCTCTG
TGTGTCCTGTGTGGCGCTGAGAATGCCTCGTTCCGAGAGTTGCATGCACA
TGCCATGAGTGCCTACCGGAATGAAAGGCAACCTTTTGGCAGCCGCCGAG
CGATGCGTGCCGCGCAGTCTGCCCGAGCATCTGGAGATCGATGGAAATGT
GCTGGCCATCATTCTAATTAACCGACACACGCGAAAAGTCTCTTTACCAG
AAATCTAAACCAGTCGGCGAGTGTCAAGCGCATCATTGTGGGGCGATCTA
CAGCGCTTGGACATTTCTAAAGAAGTTTTTCGATCAACTATGGATTGCAG
TCCACCATTGGAAACCCAGTCGTTCAGCATAAAACTACGTTATTGACCAA
ATTAGCTGCTCGACTACACAAGTGCTATGGCATAGAT
UFO06518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1547 | CG13396-RB | 59..1181 | 10..1129 | 5285 | 98.6 | Plus |
| fy-RA | 1688 | CG13396-RA | 200..1322 | 10..1129 | 5285 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8401920..8402945 | 1112..88 | 4625 | 98.6 | Minus |
| 2L | 23513712 | 2L | 8403004..8403081 | 87..10 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:08 has no hits.
UFO06518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:38:33 Download gff for
UFO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 362..1491 | 10..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:11 Download gff for
UFO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1329 | 10..1137 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:44 Download gff for
UFO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1329 | 10..1137 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:44 Download gff for
UFO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8401890..8402945 | 88..1137 | 98 | <- | Minus |
| 2L | 8403004..8403081 | 10..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:11 Download gff for
UFO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8401890..8402945 | 88..1137 | 98 | <- | Minus |
| arm_2L | 8403004..8403081 | 10..87 | 100 | | Minus |
