UFO06521.5prime Sequence
1119 bp (999 high quality bases) assembled on 2009-08-18
> UFO06521.5prime
CAGTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTCCCAAATTG
GCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAACGTACAAA
TCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATGTGGCCAAA
TGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAGCTATTTCG
GAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTGAAGGCACA
GCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATCCGCCTATC
CGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCTTAGAGCAC
AAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAGGACATGAC
TGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGTGTGGTTCT
TTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTGGTAACGAG
GGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTCACTTTGAC
CTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCTCTACGTGT
CCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATGGGGGTGAG
GTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTGATTGGACT
AATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCAGGATATCA
TGATTACTAAAACCCAAAATACTGAGGCCAATGGCTACGGTTTCGATTTG
GAACAGATATCCAGCGAGACGGTCACACCTGCATCAGATTTGCGCAGAAT
CTGGCGCGAGTTCTACGAGGAGCCCAGGGACTTCATTTACGCCGACACTC
CGTATGATACTACGCGTTTCGAAGAGGTTTCTCAGGCATCTTCGATCACA
GGTAATGCGCAAGCGATATGCCATCAGTTTCGACACCTGCTCTTGAGCAC
AGACAGAGCATTAAGCTGTAGCCCGCTATTATCATGGTGGTCGGCATCGA
CTGGGCGTTTGAGGCAGCTAGAAGGCAGAACGCACCTTCTTGATCTTTGG
AGAACATTGCGGACTTGAA
UFO06521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3568-RA | 1693 | CG3568-RA | 74..1183 | 9..1102 | 5010 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4543175..4543801 | 363..987 | 3035 | 99.7 | Plus |
| X | 23542271 | X | 4542703..4542912 | 9..218 | 1050 | 100 | Plus |
| X | 23542271 | X | 4542976..4543123 | 217..364 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:12 has no hits.
UFO06521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:14 Download gff for
UFO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 60..1149 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:11 Download gff for
UFO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 67..1156 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:11 Download gff for
UFO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 67..1156 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:11 Download gff for
UFO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4542696..4542912 | 1..218 | 98 | -> | Plus |
| X | 4542978..4543122 | 219..363 | 100 | -> | Plus |
| X | 4543176..4543903 | 364..1078 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:11 Download gff for
UFO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4436729..4436945 | 1..218 | 98 | -> | Plus |
| arm_X | 4437011..4437155 | 219..363 | 100 | -> | Plus |
| arm_X | 4437209..4437936 | 364..1078 | 97 | | Plus |
