UFO06525.5prime Sequence
1087 bp (990 high quality bases) assembled on 2009-08-18
> UFO06525.5prime
CAGTCGACATGCCGCCGTGTACTTTGCGCCAGAGAGGCATGGCCTATATA
CCACGTCGGGACAAGAACCGAGAGAAGGATGTTTTGGCCCCCAAGCCTGT
GCATCCGCGCTCCTTGAGATTTCATGGATTCTTTGGCATGTCGTACGTGC
ATCAGCATGTGATGGTTGATGAGCGATGGACCCCCAATTCCCTAACCGAG
CAGTTCAAGGGAATGACCGACTTGTTGACGCGTCGTTTGGTGTTCAAGAA
CCATGAGTCGAAGGCGAATCGCCAGCGGTATTTTCGAGAGAACAAGCGCC
TGAAGTTGCAATGCCGCGATGGTCGCGCAAAATTACAGAATATTCTGATC
AATGACAATACCCATAAGATCCGCAACTTTCTCATCAACCATAAGCCGCT
GCAGAGACTGTACCAGAAGATGCCAATTCACTTGGTCGTGGACAACATCA
ATCAGCGAACTTTTGTGATGAGAAAGGAGCGGGATCGTTTGGAGTTTCGC
TTGGATCAGTTGAAGCAGCATTACAAGGAACAGCTGCTGCGTAGAGCACT
TTTGCAGAATCGCATTAAGTACCAGAACGAATTTATTCTCGACGAGGAGT
TGAAGTCACGAGTTTTTCTTAAGAAGATTGAAAATTCGAATGTGCGCCTA
AAGGCGATCAAGACGATCAACAACACCTACAAAAAGATGATACAGGTGCT
CGTTCATGACGAGATCTTCTATGAACCCATCTTGCGCTCCCTTAGCAGCG
ACATGGACGATCAATCAAACTTCATCAAACATATCCTCTTCCTGGGCATG
CCGGCGATTGCGAAGTTCAAGGAGTTGAACGATGAGTTCCGAAACATGGA
GGAGAAATCCCGGAAAACCTGCAGCATAAATTGCAAATGCTGTCCGCTCT
AAAGAAACCGGCAGTACATCGATTGCTAATTTCAATAAGCCCAGAGCGCT
CACGACGATCTGAAGCGATATGTCAGCAACTCAGAGCATGATGATCTAAA
CTGAGCTACGCTGTGAAAGACATCAGAGTAGGTGTGACCCTCTGTCGCAG
CAGAAATTTATCACGAATGAAGCAGGTGGACACAATG
UFO06525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14609-RB | 2081 | CG14609-RB | 123..1238 | 7..1087 | 4725 | 96.3 | Plus |
| CG14609-RA | 1993 | CG14609-RA | 123..1238 | 7..1087 | 4725 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7201758..7202167 | 536..943 | 1935 | 99.3 | Plus |
| 3R | 32079331 | 3R | 7201375..7201682 | 229..536 | 1540 | 100 | Plus |
| 3R | 32079331 | 3R | 7201092..7201313 | 7..228 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:05:41 has no hits.
UFO06525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:13 Download gff for
UFO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 117..1138 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:26 Download gff for
UFO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 117..1138 | 1..1008 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:31 Download gff for
UFO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 117..1138 | 1..1008 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:31 Download gff for
UFO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7201086..7201313 | 1..228 | 99 | -> | Plus |
| 3R | 7201375..7201682 | 229..536 | 100 | -> | Plus |
| 3R | 7201759..7202244 | 537..1008 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:26 Download gff for
UFO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3026808..3027035 | 1..228 | 99 | -> | Plus |
| arm_3R | 3027097..3027404 | 229..536 | 100 | -> | Plus |
| arm_3R | 3027481..3027966 | 537..1008 | 96 | | Plus |
