UFO06526.5prime Sequence
1085 bp (995 high quality bases) assembled on 2009-08-18
> UFO06526.5prime
CAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACACACAACGCA
CTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGACCACGCTA
TGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATTGGCGTGTG
CCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCGACTACGTC
AAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACCTGCGTGAA
TGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCTGCTGGGCG
AGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACGACACGAAC
ATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAACCACATCAA
GTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAAGGTGGAGT
ACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCGAGTATGTG
GCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTACGTGGTGGT
AGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGCCGTTGAAC
TGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGCCGGGTCGT
ACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCCTGTTTCCT
TAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCATTGTGCTGC
GCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCATGATGACTGAG
CGCGGCATTCCCTTCCTGGGCACCACAATCCCCAAGGCCGTGGAGAGGCA
GGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACACCACCCAAATGGA
CGGCAGCGACGTTTTCGACACCGTGCTGTGGCCATTGGCGCAAAGTCTCA
TCGAGGACCTCACTGACGCCGCGATGAGACTCATGACGACAGATTGTGTA
GACGCGCGAGCCACAGCGTGCTCATAATATTTGCAGTGGGACTCATATAT
GTCGACAGAGCTCACGCGTTGCATCTGTCCGACGC
UFO06526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-2-RA | 1794 | CG11401-RA | 96..1176 | 9..1067 | 4825 | 97.7 | Plus |
| Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 98..452 | 775 | 81.8 | Plus |
| Trxr-1-RB | 2277 | CG2151-RB | 483..837 | 98..452 | 775 | 81.8 | Plus |
| Trxr-1-RC | 2108 | CG2151-RC | 762..1027 | 552..817 | 490 | 78.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22550321..22551278 | 9..962 | 4590 | 99.6 | Plus |
| X | 23542271 | X | 8246098..8246439 | 98..439 | 680 | 81.2 | Plus |
| X | 23542271 | X | 8246819..8246952 | 684..817 | 370 | 85.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:08 has no hits.
UFO06526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:12 Download gff for
UFO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1117 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:23 Download gff for
UFO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1117 | 1..1014 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:21 Download gff for
UFO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1117 | 1..1014 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:21 Download gff for
UFO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22550312..22551342 | 1..1014 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:23 Download gff for
UFO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22543412..22544442 | 1..1014 | 98 | | Plus |
