UFO06529.5prime Sequence
1108 bp (995 high quality bases) assembled on 2009-08-18
> UFO06529.5prime
CAGTCGGACATGCAATACAAAGGGCTCGATACCATCTCGACCGCGATGAT
TTGTTTGGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAACTTCACGC
GAGACGCAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTGAGAAAACC
CCAAATAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTA
CTCACGCCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGAGGAGGAGT
GCCTCTGGCAGCCCAAGCACAACGACTACAGCAATCACACAGCCCGTAAC
AAGTCCTACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAGCCCAATCC
GGACAGGGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTCCGCTTTTC
GGCGGGAATTCCGCAAGACGAGTACCAAAGGCGACTACGCAACGCGTTTG
TGGTACTACGACAAGCTGCTTTTCATCGCTGACCACAAGCCCAAGCGCCA
CGAACTCGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTTCGACGACG
AGGAGTCAATGGAGTTCGAGGACGACTCACATCACACGGGCACTCAGTCT
CAGCACATGGAGTCCATAATACCCACGTCCCCGGACGATGTGGAAGAAGT
CGCGGCGACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGCCACTCTGA
GCACCATTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTCAAGAGCGAG
GAGCACCAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCAAGCACACCAGCA
AATGGTAGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGCGGCGGCTC
AGGACATGCCGTGAAGGTCTTAGAGATCACCTCCCTAGACTCCAACTCCC
AGCGCGAGATACACAGCGGTCAATCATCTGGAGCACCACCAGCAGCAGCT
CCACTGCAGCAGACGATGGACAACATCAGGCGTCCCACCATCAGAATAGC
CGCGATCACTATCAGCATTGTTTGGCATGCGCACAACTGCTATACCACAC
AGCGCTACGAGCCATCGCACCGGGCAGACGACAGGATACGATGCATGGCG
GGAATGTG
UFO06529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5180-RC | 1517 | CG5180-RC | 109..1224 | 10..1108 | 4970 | 97.5 | Plus |
| CG5180-RB | 1341 | CG5180-RB | 1..1048 | 78..1108 | 4630 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20558648..20559192 | 370..913 | 2675 | 99.8 | Plus |
| 3R | 32079331 | 3R | 20558243..20558592 | 23..372 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 20559261..20559378 | 916..1027 | 235 | 89.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:08:20 has no hits.
UFO06529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:48 Download gff for
UFO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RB | 100..1151 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:50 Download gff for
UFO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RC | 100..1151 | 1..1040 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:06 Download gff for
UFO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RC | 100..1151 | 1..1040 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:06 Download gff for
UFO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20558237..20558591 | 14..371 | 98 | -> | Plus |
| 3R | 20558650..20559196 | 372..915 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:50 Download gff for
UFO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16383959..16384313 | 14..371 | 98 | -> | Plus |
| arm_3R | 16384372..16384918 | 372..915 | 99 | -> | Plus |
