UFO06530.5prime Sequence
1097 bp (1004 high quality bases) assembled on 2009-08-18
> UFO06530.5prime
CAGTCGGACATGTCAACCGGAAGGCCCATAAAGTGTGTAGTCGTTGGTGA
CGGCACCGTCGGAAAGACCTGCATGCTAATCTCCTACACGACAGACTGCT
TTCCCGGCGAATATGTGCCCACAGTCTTCGACAACTACTCGGCGCCCATG
CAAGTGGACACAATACAGGTCTCGCTGGGACTGTGGGATACGGCGGGTCA
GGAGGACTACGACCGCCTGAGACCGCTATCCTACCCGCAGACAGACGTTT
TCCTGATATGCTACAGCGTGGCGAGTCCCTCGTCCTTTGAGAACGTCACC
TCAAAATGGTATCCGGAGATAAAGCACCACTGTCCCGATGCGCCCATCAT
TCTAGTTGGCACCAAAATCGATTTGCGCGAAGATCGAGAGACACTCAGCG
GCCTGGCAGAGCAGGGACTGACGCCGCTGAAGCGCGAGCAGGGCCAGAAG
CTGGCAAACAAGATACGCGCTGTGAAATACATGGAGTGCTCCGCCTTGAC
GCAGCGCGGTCTCAAGCCGGTGTTCGAGGAAGCGGTGCGCGCGGTGCTCA
GACCAGAGCCGCTAAAGCGACGCCAGCGAAAGTGTTTAATAATGGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGC
GTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAA
CAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCA
TCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATC
ACAAACGGCATGATGACCTGATCGCAGCGCATCAGCACCTTGTCGCTTGC
GTATATATTTGCCCATGTGAAACGGGGCGAGAGTGTCATATGCACGTTTA
ATCAACTGTGACTCACCCAGGATGCTGAACGAAAACCTATCTCATACTTT
AGAAAGCAGGTTCCGTACCGCCATCTTGGAAATATGTTGAACTGCGA
UFO06530.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mtl-RC | 1197 | CG5588-RC | 215..799 | 10..594 | 2910 | 99.8 | Plus |
| Mtl-RA | 2002 | CG5588-RA | 244..828 | 10..594 | 2910 | 99.8 | Plus |
| Mtl-RB | 2097 | CG5588-RB | 339..923 | 10..594 | 2910 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27638073..27638306 | 126..359 | 1155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 27638378..27638541 | 358..521 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 27637888..27638003 | 10..125 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 1301985..1302334 | 380..31 | 415 | 74.6 | Minus |
| 3R | 32079331 | 3R | 27638622..27638697 | 519..594 | 380 | 100 | Plus |
| 3L | 28110227 | 3L | 7434290..7434503 | 239..26 | 290 | 75.7 | Minus |
| X | 23542271 | X | 19698114..19698237 | 175..298 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:49 has no hits.
UFO06530.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:11 Download gff for
UFO06530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..926 | 1..598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:27 Download gff for
UFO06530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..923 | 1..594 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:06 Download gff for
UFO06530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mtl-RB | 331..923 | 1..594 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:06 Download gff for
UFO06530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27637880..27638003 | 1..125 | 96 | -> | Plus |
| 3R | 27638073..27638305 | 126..358 | 99 | -> | Plus |
| 3R | 27638379..27638539 | 359..519 | 100 | -> | Plus |
| 3R | 27638623..27638697 | 520..594 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:27 Download gff for
UFO06530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23463602..23463725 | 1..125 | 96 | -> | Plus |
| arm_3R | 23463795..23464027 | 126..358 | 99 | -> | Plus |
| arm_3R | 23464101..23464261 | 359..519 | 100 | -> | Plus |
| arm_3R | 23464345..23464419 | 520..594 | 100 | == | Plus |
