UFO06535.5prime Sequence
1121 bp (1017 high quality bases) assembled on 2009-08-18
> UFO06535.5prime
CAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGGCCTTGGGA
TGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTGCCAAAATG
CTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCTGTTTAACA
CATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAATCGAGCCC
TACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCTAGTGGCAC
TGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGGCTTCTCCT
CCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACAAGGTGAAA
CTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGCAGCTATAA
GGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGGTGAATTCA
ACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATGGTGAGGTC
TACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATCGACTCAAA
GCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATTTGCAGATC
CTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATTGGCGCGAT
ATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAACCCCTTAT
GTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGACCAGTTTC
TCAAGGAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTA
AGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAG
GAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAATCCAGATGGAGTTCTGAGTCATTACT
GGATCTATCAACAGGAGTCAGCGAGCTCGATATCAAATACGCCCCGCCCT
GCCACTCATCGCAGTACTGTGTATCATAGCATTCTGCGACTGCAGCCATC
CAACGCATGATGACTGATCGCAGCGGCATCCAGGACCTGTGCCTGGCTTA
ACGTGGCAATGGGTGAACGGG
UFO06535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5945-RB | 1079 | CG5945-RB | 209..958 | 9..758 | 3750 | 100 | Plus |
| CG5945-RA | 903 | CG5945-RA | 79..828 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13240335..13240710 | 87..462 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 13241503..13241652 | 609..758 | 750 | 100 | Plus |
| 2L | 23513712 | 2L | 13240763..13240909 | 463..609 | 735 | 100 | Plus |
| 2L | 23513712 | 2L | 13240197..13240275 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:39 has no hits.
UFO06535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:14 Download gff for
UFO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 58..819 | 1..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:32 Download gff for
UFO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 72..833 | 1..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:07 Download gff for
UFO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 72..833 | 1..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:07 Download gff for
UFO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13240190..13240275 | 1..87 | 96 | -> | Plus |
| 2L | 13240336..13240710 | 88..462 | 100 | -> | Plus |
| 2L | 13240763..13240909 | 463..609 | 100 | -> | Plus |
| 2L | 13241504..13241657 | 610..765 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:32 Download gff for
UFO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13241504..13241657 | 610..765 | 98 | == | Plus |
| arm_2L | 13240763..13240909 | 463..609 | 100 | -> | Plus |
| arm_2L | 13240190..13240275 | 1..87 | 96 | -> | Plus |
| arm_2L | 13240336..13240710 | 88..462 | 100 | -> | Plus |
