UFO06537.5prime Sequence
1096 bp (979 high quality bases) assembled on 2009-08-18
> UFO06537.5prime
CAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGCAACTGCAC
ATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTTCTGGACAG
TGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCACCCCACTGA
TTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGCTGCTCGAT
CAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACGCCCCTTTT
CTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCTGATAAAGG
CGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGCCCCTTTTT
GTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTCTTGGACTG
CGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCCGGTTTTTA
TCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGATTCAGGCT
GGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCCCTGTGGAT
AGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCTCCAGAACG
GCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCCTCTTCAAG
GCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTCAAATACCG
ACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCATGCCGCCG
CCATGTTTGGCCACATGACCGTCTGCAAGCAGCTGGTGGCCGCCGGCAGC
GATGTCCTGCTGAAGAACCACGATGGTCTGACGGCCCTGCAGTTGGCGCA
CCAGCAAAAGTACACCTCCATCTGTGATTATCTCCAGGAACGCATACGGA
CTATGGTGGCGCGCAGCGCAGGCATGGCCACGTCGGAGTGTCGTCACGTC
AAGACGATGTCGCGGCAGCTTTCTAGACATCGTTGGCGCGCGGGCCAGTA
GTGTCATATCATATCATATCATATCATATCCACCTAGCTAGAGAATCTGT
CATGGACTATGCTTGGAATCCACCATAAACGTCGGCGCATCTGACG
UFO06537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 2395 | CG3104-RC | 929..1889 | 8..962 | 4665 | 99.4 | Plus |
| CG3104-RB | 1933 | CG3104-RB | 467..1427 | 8..962 | 4665 | 99.4 | Plus |
| CG3104-RA | 2213 | CG3104-RA | 504..1464 | 8..962 | 4665 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2849787..2850279 | 919..427 | 2465 | 100 | Minus |
| 2L | 23513712 | 2L | 2850334..2850633 | 429..130 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 2852146..2852259 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:25 has no hits.
UFO06537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:08 Download gff for
UFO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RB | 461..1431 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:01 Download gff for
UFO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1464 | 1..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:52 Download gff for
UFO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1464 | 1..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:52 Download gff for
UFO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2849738..2850277 | 429..962 | 98 | <- | Minus |
| 2L | 2850335..2850631 | 132..428 | 100 | <- | Minus |
| 2L | 2852147..2852268 | 10..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:01 Download gff for
UFO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2852147..2852268 | 10..131 | 96 | | Minus |
| arm_2L | 2849738..2850277 | 429..962 | 98 | <- | Minus |
| arm_2L | 2850335..2850631 | 132..428 | 100 | <- | Minus |
