UFO06539.5prime Sequence
390 bp (29 high quality bases) assembled on 2009-08-18
> UFO06539.5prime
CAATCCACATGAGTGCTCACCCGAGTCCGGGTATGAGTCCCCAGCACCGA
TACCTATTTCAATGTCTTCAGCAACATACCGAGCAGGAGATTGTGTACCC
ATGGATCAATGAACTGGCCCCTCCGGACACGCGTGAAACCGCTCTGCTCG
AGCTAAGTTTCCTTGTGAGACGGACCTGGCCCCCATGCTTGGAACAGCTT
CCGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATCTACCCATCGA
TAACGCCGCCCACTTTGACGGCCCACCACTCGAACCGCGTGTGCAACACC
CTGGCGCTGCTGCCTTGCGTCTCCTCGCACCCGGAGACTCACACGGCCTT
CCTGCAGGCCCAAATACCGCTGGACTTGTACCCTTTCTTG
UFO06539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 1612 | CG14213-RA | 482..805 | 69..390 | 1210 | 92 | Plus |
| Rcd-1-RB | 1544 | CG14213-RB | 414..737 | 69..390 | 1210 | 92 | Plus |
| Rcd-1-RC | 1725 | CG14213-RC | 628..918 | 102..390 | 1135 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19639446..19639745 | 93..390 | 1100 | 92.7 | Plus |
| 2L | 23513712 | 2L | 9013566..9013786 | 390..171 | 485 | 82.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:27 has no hits.
UFO06539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed on 2009-10-05 15:32:07 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed on 2013-08-05 01:12:19 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:35:21 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:21 Download gff for
UFO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19639446..19639745 | 93..390 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:19 Download gff for
UFO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19533479..19533778 | 93..390 | 92 | | Plus |
