UFO06541.5prime Sequence
1139 bp (1027 high quality bases) assembled on 2009-08-18
> UFO06541.5prime
CAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAGTACAGTAC
TCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAACACTCGAAC
GATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGCTGCCGTGG
CAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCTGGACCTCC
CCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCGCCGCTGAG
CCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATTGATTGCCG
TCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTGATCGCATT
GGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTCCTGGCTTT
CGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACATGTCCCGCC
TCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGCCCATGTAT
GTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGATCCTTGAT
GCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCATTGGACCGT
ATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGCCCGTAGTG
TTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTCTTCGCCGG
AAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCTTCGGGGCC
AGAGTGCCGAGGGCGTGCACGACGAGATGGCCGAGATCCAGGCCAATGTA
GAGGAGGCGATGGCCAGCAAGGGCACAGTGATGGATTTGTTCAAGATGCC
GGCAATCGCAGGCCTTGTTCATCTGCGCTGGCCTGATCTCTTTCAGCAGC
TGTCCGGCATCAATGTGGTCCTCTTCAACAGCCAGTCTATCTTCGCCAGT
GCCAACACTGGGCTGGATCCGGCGATTGCCACCATCATAATCGGATGTGT
TCCAGGTGGGATCCTCGGCACTGACGCCTCTGGGGGGCGATCGCCTTGCA
GGAAGGGATGCTGCTGACGTCCTCAATGTGATGTCATTGGGCTGCGCTGG
GAGCATTCTTCTATGCACTGTCAGGAGACTCTCCATGGT
UFO06541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1213-RD | 1862 | CG1213-RD | 230..1344 | 9..1113 | 5240 | 98.6 | Plus |
| CG1213-RB | 1862 | CG1213-RB | 230..1344 | 9..1113 | 5240 | 98.6 | Plus |
| CG1213-RC | 2092 | CG1213-RC | 460..1574 | 9..1113 | 5240 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5845494..5846005 | 567..1074 | 2220 | 98.2 | Plus |
| 3R | 32079331 | 3R | 5845007..5845424 | 152..569 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 5844559..5844703 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:31 has no hits.
UFO06541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:06 Download gff for
UFO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RB | 207..1335 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:32 Download gff for
UFO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RC | 453..1581 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:54 Download gff for
UFO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RC | 453..1581 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:54 Download gff for
UFO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5844552..5844703 | 1..153 | 97 | -> | Plus |
| 3R | 5845009..5845422 | 154..567 | 100 | -> | Plus |
| 3R | 5845495..5846057 | 568..1124 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:32 Download gff for
UFO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1670274..1670425 | 1..153 | 97 | -> | Plus |
| arm_3R | 1670731..1671144 | 154..567 | 100 | -> | Plus |
| arm_3R | 1671217..1671779 | 568..1124 | 96 | | Plus |
