UFO06542.5prime Sequence
1146 bp (1054 high quality bases) assembled on 2009-08-18
> UFO06542.5prime
CAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCGCCCTGGCC
ATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTCTTGGATGA
AATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAGTGGATTCG
TGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCCTGGACAGC
ATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAGTTTGCCCA
AAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAATCGTCGACT
TTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGGGGATTGAT
CGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCTCTCGCCAG
ACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGCCGTGAATA
ACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCGCCATAATC
CAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGAGTGGATAA
GCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCATAAATGAGC
TACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGGAGTTGCAA
GCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATCGAAAAGTA
CCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTGCGTCCAGT
TCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGGCACTACGC
GGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTTCAAGGCAT
CCGACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGGCCAGACCC
TGGCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGCTGGATGAG
ATCATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGACGACTCTAG
CTCTAATAATGAAACGACCACCATAGTTCGCAGCTTTCTAGAACCATTCG
TTTGGCGGCGCGGCCCAGTTAGTGGTCATAATCATAATCATTATCTATCC
TAATCCAACTAGGCTAGGAGATCTGGGCCATGACAGCTTGATTCCA
UFO06542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16826-RB | 1248 | CG16826-RB | 25..1047 | 9..1030 | 5090 | 99.9 | Plus |
| CG16826-RA | 1187 | CG16826-RA | 25..1047 | 9..1030 | 5090 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13347797..13348813 | 9..1025 | 5085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:36:47 has no hits.
UFO06542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:05 Download gff for
UFO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 2..1038 | 5..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:14 Download gff for
UFO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 2..1038 | 5..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:37 Download gff for
UFO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 17..1056 | 1..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:37 Download gff for
UFO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13347789..13348833 | 1..1038 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:14 Download gff for
UFO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13347789..13348833 | 1..1038 | 98 | -> | Plus |
