UFO06544.5prime Sequence
1080 bp (967 high quality bases) assembled on 2009-08-18
> UFO06544.5prime
CAGTCGACATGTGTTCCATACTCGCACGTGCAAGGATGTTTTGTGCAGGA
ATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCCAAAACTCGGCCTGGC
GCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCCCGGGTGTTTTCCTTT
GGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTCAAGGAGGAGGAGTAC
TTCATTTCGTTGACCCAAACCCTCGTGGGCAAGATGCGGGACAAGAAGGA
GCCCGGCGACTACCTGCCCAACTGGGACGAGTTCCAGAAGACTCTGGACC
ACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAGCACAAGAACGTACTC
GAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGACATCAAATTATTGCA
CGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATACTGCCACAGAACTGG
AACTCGAATCAGATCCCCAGAACACCAAAGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCC
AGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGA
GCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGT
AATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATG
AACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATT
TGCCCATGGTGAAACGGGGGCGAAGAGTTGTCCATATTGGCCACGTTAAA
TCAAACTGGTGAACTCACCCATGATTGGCTGAGACGAAAAACATATTCTC
ATAAACCCTTAGGGAAATAGCAGTTTCACGTACACGCCACATCTTGCGAT
ATATTGTGTAGACCTGCGAAATCGTCTTGTATTCATTCGAGCGATGAAAC
GTTTCAGTTGCTCATGAACGGTACAGGTGA
UFO06544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:12:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9875-RB | 730 | CG9875-RB | 96..566 | 9..479 | 2355 | 100 | Plus |
| CG9875-RA | 674 | CG9875-RA | 96..566 | 9..479 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:12:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23357893..23358178 | 89..374 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 23358238..23358344 | 373..479 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 23357755..23357834 | 9..88 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:12:19 has no hits.
UFO06544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:04 Download gff for
UFO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 73..552 | 4..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:19 Download gff for
UFO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 92..571 | 4..487 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:54 Download gff for
UFO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 92..571 | 4..487 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:54 Download gff for
UFO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23357751..23357834 | 4..88 | 97 | -> | Plus |
| 2R | 23357893..23358178 | 89..374 | 100 | -> | Plus |
| 2R | 23358240..23358344 | 375..479 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:19 Download gff for
UFO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19245274..19245357 | 4..88 | 97 | -> | Plus |
| arm_2R | 19245416..19245701 | 89..374 | 100 | -> | Plus |
| arm_2R | 19245763..19245867 | 375..479 | 100 | == | Plus |
