UFO06546.5prime Sequence
1089 bp (971 high quality bases) assembled on 2009-08-18
> UFO06546.5prime
CAGTCGACATGCAGCCCCGAAATAAATTAAGCAAGTGTTTGATCTATATA
ACGCCCTGTGTGCAGCAATTGTGTTTCTATGGCACTAGGCGACATTTACT
GGCCATGCAGTCCTTGTCCGCCCAAAGGAATCGGAAGTCTGATGTCTCCG
AAAAGAAGGCAGTAGAGACAACAGTCGAATGGGGGCGTGGCCCCCAAGCG
GGCGACCGCCTTCCAACAGCCGTTAGTCTGCTCCGTCGAAATTCGACAGA
TTCCGCGAGGAACGAGGTGAAAACCGCATTCATTCGATACGAAAAGTCTA
TGAACGAATTGGCCAAAAGTGCCCGAAAGCTATATAAAAATGCCCGGCTA
AGGAGCTTGCCTTTGAGGAAGCCCATGATGCGAGGAAAAATCGGTGACTC
TGATGCAAGACCCCTAAGAACACCGGTGCCCAGTGCTTGGGCCATAACCG
AGCGGGAAAATAAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAG
CGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAA
CGGGGGCGAAGAGTTGTCCATATTGCCACGTTTAAATCAAAACTGGTGAA
ACTCACCCAGGATTGCTGAGACGAAAAACATATTTCTCAATAAACCCTTT
AGGAAATAGCAGTTTCACCGTACACGCCACATCTGCGAATATATTGTGTA
GAACTGCGGAAATCGTCTGGATTCACTCGACGATGAAACGTTTCAGTGGC
TCATGAACGGTTAACAGGGTGAACCTATCATAATCACCA
UFO06546.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1835-RA | 663 | CG1835-RA | 104..559 | 9..464 | 2280 | 100 | Plus |
| CG1835-RC | 571 | CG1835-RC | 73..467 | 70..464 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20669107..20669432 | 70..395 | 1630 | 100 | Plus |
| X | 23542271 | X | 20669494..20669565 | 393..464 | 360 | 100 | Plus |
| X | 23542271 | X | 20670669..20670740 | 393..464 | 345 | 98.6 | Plus |
| X | 23542271 | X | 20669889..20669959 | 393..464 | 310 | 98.6 | Plus |
| X | 23542271 | X | 20670283..20670353 | 393..464 | 310 | 98.6 | Plus |
| X | 23542271 | X | 20668431..20668491 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:01 has no hits.
UFO06546.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:10 Download gff for
UFO06546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1835-RA | 100..570 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:34 Download gff for
UFO06546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1835-RA | 94..564 | 1..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:51 Download gff for
UFO06546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1835-RA | 94..564 | 1..471 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:51 Download gff for
UFO06546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20668421..20668491 | 1..69 | 94 | -> | Plus |
| X | 20669107..20669430 | 70..393 | 100 | -> | Plus |
| X | 20669890..20669959 | 394..464 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:34 Download gff for
UFO06546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20539448..20539518 | 1..69 | 94 | -> | Plus |
| arm_X | 20540134..20540457 | 70..393 | 100 | -> | Plus |
| arm_X | 20540917..20540986 | 394..464 | 98 | == | Plus |
