UFO06547.5prime Sequence
1101 bp (993 high quality bases) assembled on 2009-08-18
> UFO06547.5prime
CAGTCGACATGGCCGCCAAAACACCGACATACCCAGATCTGGGCAAGCTG
GCCCGCGATCTCTTCAAGCGCGGCTACCATCCGGGCATCTGGCAGATCGA
CTGCAAGACCCTGACCAATTCGGGGATTGAGTTCTTCACCACCGGCTTCG
CCAGCCAGGACAACAGCAAGGTGACCGGCTCGCTTCAGAGCAAGTACAAG
ATCGAGGACCAAGGCCTGACCCTAACCGAGCGATGGAACACGGAGAACTG
GCTCTTCGGTGAGATTATGCACCGGGATAAGTTGGCACAGGGCCTGATGT
TGGCCGTCGAGGCCAAGTTTCAGCCGGGATCAAATGAGGCGGATGGCAAG
TTCAAGATGGGCTATGCCCAGGACAACTTTAACTTCCTGGCCGACATTGG
ACTGAACTCGGAGCCGATACTCAACTGTTCGCTGGTTGTGGGCCACAAGG
AGTTCCTCGGCGGCGTGGGCACCGAATTTGACGTTGGCAACACCGAACTC
AAGGGCTGGAAGGTGGCCCTTGGTTGGACAAATGAAACTGCCACCCTCCA
TGGCGAGCTGAAGAACGGCGACACCTGGTTGGCCTCGCTGTTCTACAAGG
CGAGCGAGAAGATCGATGCCGGTATCGAGGTAACCAAGGGAGCCGGCGGC
GGCGAAGCTGCCGAGGGTGAACAGCAGGGCGGAGATGTGGTCGTCAATCT
GGGCATGATCTACCACTTGGAGGAGGATGCCCTCGTACGCGCCAAGGTCA
ACAACCTGGTGGAGCTGGGCCTGGGCTATGAACAGAAACTGCGCGACGGC
ATCACCGCCTCCATATCCGCCGTGCTGGATTGCAACAACTTTAAAGACGG
AAACCATCGGTTCGGCGTGGGAATTGCCCTCCAGTGCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGTCATATCATATCATATC
ATATCATATCACACTAGCTAGGAGATCTGGTCATGACTAGTGCTTGGATT
CTCACAATAAAAACGCCGGCGGCACGAGCGTCCTGACAATCGAATGGGAG
TCTGAGGTCATTACTGATCTATCAACGGAATCAGCGAGTCGAATTCAATT
A
UFO06547.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porin2-RB | 1069 | CG17137-RB | 88..966 | 9..887 | 4380 | 99.9 | Plus |
| Porin2-RA | 1128 | CG17137-RA | 147..1025 | 9..887 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10846573..10846898 | 334..9 | 1630 | 100 | Minus |
| 2L | 23513712 | 2L | 10845891..10846218 | 887..560 | 1625 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10846281..10846506 | 560..335 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:28 has no hits.
UFO06547.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:09 Download gff for
UFO06547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1028 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:03 Download gff for
UFO06547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1028 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:55 Download gff for
UFO06547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Porin2-RA | 138..1028 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:55 Download gff for
UFO06547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10845887..10846218 | 560..891 | 99 | <- | Minus |
| 2L | 10846282..10846506 | 335..559 | 100 | <- | Minus |
| 2L | 10846573..10846902 | 1..334 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:03 Download gff for
UFO06547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10845887..10846218 | 560..891 | 99 | <- | Minus |
| arm_2L | 10846282..10846506 | 335..559 | 100 | <- | Minus |
| arm_2L | 10846573..10846902 | 1..334 | 98 | | Minus |
