UFO06548.5prime Sequence
1064 bp (969 high quality bases) assembled on 2009-08-18
> UFO06548.5prime
CAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGATTTTGGCC
CTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAAGATGAGCG
TATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGCCAAGATCG
CCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAAGTCTCTCC
ACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATCTCCATCGA
CGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATTCCTGCTAA
CCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACAAGGTCACA
CTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGCGGAAAGGA
TCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACAGGTGAAGA
AGATGGATCCTAGCGACAAAAGCTATCAGCCATCGCTGGATGCCTATGTG
AGGCGTCATCCAGCTGCCATCAATTGGGTAAAAGCTCACAATTTCTACCT
TTGCGAACTGGAAATTAGCAATATCTTTGTTCTGGACTTCTATGGAGGTC
CTCATAAAGTGAGCGCCTCTGACTATTACGCTGTTTCGAATGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAATTACGCCCCGCCCTGCCACTCATCGC
AGTACTGTGTATCATAGCATTCTGCGACATGCAGCATCACAACGCATGAT
GACTGATCGCAGCGCATCAGCACTGGTCGCTGCGTATATATTTGGCATGT
GAACCGGGGCGAGAGTGTCAATGGCCGTCATCCAACTGGAACTCCACCAG
GATTGCTGAACGAA
UFO06548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CREG-RD | 962 | CG5413-RD | 107..740 | 8..641 | 3170 | 100 | Plus |
| CREG-RB | 967 | CG5413-RB | 112..745 | 8..641 | 3170 | 100 | Plus |
| CREG-RA | 899 | CG5413-RA | 50..683 | 8..641 | 3170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17393816..17394260 | 452..8 | 2225 | 100 | Minus |
| 3R | 32079331 | 3R | 17393494..17393602 | 641..533 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 17393673..17393758 | 534..449 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:37 has no hits.
UFO06548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:09 Download gff for
UFO06548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RB | 46..688 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:34 Download gff for
UFO06548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RA | 41..683 | 1..641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:57 Download gff for
UFO06548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CREG-RA | 41..683 | 1..641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:57 Download gff for
UFO06548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17393494..17393600 | 535..641 | 100 | <- | Minus |
| 3R | 17393673..17393754 | 453..534 | 100 | <- | Minus |
| 3R | 17393816..17394269 | 1..452 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:34 Download gff for
UFO06548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13219216..13219322 | 535..641 | 100 | <- | Minus |
| arm_3R | 13219395..13219476 | 453..534 | 100 | <- | Minus |
| arm_3R | 13219538..13219991 | 1..452 | 99 | | Minus |
