UFO06549.5prime Sequence
1079 bp (979 high quality bases) assembled on 2009-08-18
> UFO06549.5prime
CAGTCGACATGCGGAATCAGGACGATCTAAGTCAGGGCGCCAAACAGAGA
TTTGTGGAGACGGCTGCCAGGGCCAAGAATCCCCTCGAATCTCTGAGCTA
CCAAAGCTACAAAGCCCCCAGCGGAGAGGAATTCAAACTCATCTGCCGAG
CGAAGTCGGATGCGGACTCCAAACTGCTGAAATGGGCCTTTAAGCTGGCC
GAGACGAACGTGGGACCCTATTACAAGCAACTCAAGATGGGCTGGCAGCC
CAAGATCAAAGCCGCCGAGCTGAACAAGAACTGGGCTCGCTACTTGGTGG
CCCAGAACGAAAAGAAGGAGAACGTGGCCTACGCAATGTTCCGCTTCGAC
ATGGATCACGGGGACTGTGTCCTGTATTGTTACGAAATGCAAGTGGCTGC
AGAGTATCGTAGAAAAGGCCTGGGAAAGTTCATCATGAGCACTTTGGAGG
ACTGCGCTCGCCTGTGGCATCTGGAAAAGGTCATGCTGACCGTTCTCAAC
AACAACGAAGCCTCCATTTCCTTCTTCAAGCAACTGGGCTACGTGAAGGA
CGAGATCTCGCCAGATGTCCTGGAACAAGCCGACTACCAAATCTTTAGCA
AATCGATGCTGAGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATT
CTGCCGACATGCAGCCATCACAAACGCATGATGACTGATCGCAGCGCATC
AGCACTGTCGCTGCGTATATATTTGCCATGTGAAACGGGGCGAGAGTGTC
ATATGCCACGTTTAATCAACTGTGACTCACCAGGATGCTGAACGAAACTA
TTCTCATATCGTTAGATGCAGTGCACGTA
UFO06549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7593-RA | 736 | CG7593-RA | 85..690 | 9..614 | 3000 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29724496..29724866 | 379..9 | 1855 | 100 | Minus |
| 3R | 32079331 | 3R | 29724205..29724440 | 614..379 | 1150 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:49 has no hits.
UFO06549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:02 Download gff for
UFO06549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 49..660 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:27 Download gff for
UFO06549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:47 Download gff for
UFO06549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7593-RA | 79..690 | 1..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:47 Download gff for
UFO06549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29724205..29724439 | 380..614 | 99 | <- | Minus |
| 3R | 29724496..29724872 | 1..379 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:27 Download gff for
UFO06549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25549927..25550161 | 380..614 | 99 | <- | Minus |
| arm_3R | 25550218..25550594 | 1..379 | 98 | | Minus |
