UFO06550.5prime Sequence
1092 bp (985 high quality bases) assembled on 2009-08-18
> UFO06550.5prime
CAGTCGACATGTGCGAATCGGTTACTCCGGCGGATCAGCGCAATGTGGAG
GTGAAGGCACGGATTCCGGGTGGATCTGAGGGCTTTGAGCAGCGCCTAAT
CCTGGCCAGAAACCTAAGCGGCAGCCAGGATGCGCAGTTAATCGAGCAGA
GGGACGTCTTCTTTGAATCTCCGCTGGGTGGACGGCTTAAATTGCGCTAC
TTACAGACGCCATCGCGCTCCCAATTGGTCTACTACGATCGTCCCGATGT
GGCCGGTCCCAAGCTTTCCAAGTTCAACAAGACGGAGGTGGACGAACCGG
AGGTGCTGGAGAAGATCCTGAGCCAGTCGAACGGCGTACTTGGTGTCCTG
GCCAAGCGACGGCACTTGTTCCTTTGCGGACAGACGCGCATCCACCTGGA
CGAGGTAAAGGATCTGGGATACTTCATGGAACTGGAGGTGTGCCTGACAG
AGGATCAAACCCTCGAGGAGGGTCAAGCCATCGCCGAGAAACTGTCCAGG
GAACTGGGTATCCAGGAGGCGGACCTCATGATCGGCTCGTATTTCGATGC
TCTCAGAAAGCTCAATCATGCAAGCTTTCTAGACCATTCGTTTGGCGCGC
GGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCAC
AACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAAT
AAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTT
CTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATC
AAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAA
GCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATC
GCAGCGGCATCAGCACCTTGTCGCTTGCGTATATATTTGCCCATGGTGAA
CGGGGCGAGAGTGTCATATGCACGTTTATTCAACTGTGAACTCACCAGGA
TGGCTGAACGAAACATATCTCATAACCGTAGAATAGGCCAGGTTCACGGT
AACGCCATCTGCATTATGTGTAGACTGCGGATGCCTGATCAT
UFO06550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14434-RC | 1507 | CG14434-RC | 805..1367 | 7..569 | 2770 | 99.5 | Plus |
| CG14434-RB | 987 | CG14434-RB | 285..847 | 7..569 | 2770 | 99.5 | Plus |
| CG14434-RA | 730 | CG14434-RA | 28..590 | 7..569 | 2770 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6852049..6852611 | 569..7 | 2770 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:54:42 has no hits.
UFO06550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:01 Download gff for
UFO06550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14434-RA | 22..599 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:22 Download gff for
UFO06550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14434-RA | 22..599 | 1..579 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:42 Download gff for
UFO06550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14434-RA | 22..599 | 1..579 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:42 Download gff for
UFO06550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6852037..6852613 | 1..581 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:22 Download gff for
UFO06550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6746070..6746646 | 1..581 | 97 | | Minus |
