UFO06553.5prime Sequence
1128 bp (1017 high quality bases) assembled on 2009-08-18
> UFO06553.5prime
CAGTCGACATGACGGAGCTGCTGATTGATCCGGACATCCGCGTGTGGGTG
TTCCTGCCCATCGTGCTGATCACGTTCCTGGTGGGCATTGTGCGCCACTA
CGTCTCTATACTGATATCCACGCAGAAGAAGGCCGAGATCACCCAAATCC
AGGACAGCCAGGCAATGATCCGGGCACGCTTGCTACGCGAGAACGGCAAG
TATCTCAGCGCCCAGAGCTTCTCCATGCGTAAGAACTACTTCAACAACGA
GGAGACCGGCTACTTCAAGACTCAGAAACGGGCGCCTGTAGCCCAAAACT
CATCCGCCATGCTCACCGACATGGTCAAGGGAAACTTTATTAACGTGCTG
CCCATGGTCGTGATCGGTGGCTGGATCAACTGGATGTTTTCGGGCTTCGT
CACCACCAAGGTACCCTTCCCGTTGACCCTGCGCTTTAAGCCCATGCTCC
AGCGGGGCGTGGAGCTGGCCTCGCTGGACGCCGCCTGGGTCTCCTCAGCC
TCTTGGTACTTCCTCAACGTGTTCGGCCTGCGCTCCATCTACACACTGGT
TCTTGGCGAGAACAATCATGCCGATCAGACGCAGGCACAGGCGGATGCCA
TGACGGGCGCCGCCATGACTATGCCCCAGGATCCAAAGGCCGCCTTCAAG
GCCGAGTGGGAGGCGCTCGAGATAACCGAGTACCACAACGCACTCAAGAA
CATTGACGCTGACATGCTGGCTATCGCCAGTGCACCCGCGGCATCATCCG
CAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCAT
AATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTG
GTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAAC
CGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTACTGATCTAT
CACAGGAGTCCAGCGAGCTCGATATCAAATTACGCCCCGCCTGCACTCAT
CGCAGTACTGTGTAATTCATAGCATCTGCGACTCAGGCCATCACAAACGC
ATGATGACTGATCGCAGCGGCATCAGAACTTGTCGCTGCCTATATATATT
GGCATGGACGGGCAAACTTGTCTATATT
UFO06553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6750-RA | 964 | CG6750-RA | 90..830 | 9..749 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:36:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10731534..10732129 | 749..154 | 2980 | 100 | Minus |
| 2L | 23513712 | 2L | 10732186..10732334 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:36:43 has no hits.
UFO06553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:58 Download gff for
UFO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 73..818 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:12 Download gff for
UFO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 90..835 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:36 Download gff for
UFO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 90..835 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:36 Download gff for
UFO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10731529..10732125 | 158..757 | 99 | <- | Minus |
| 2L | 10732186..10732334 | 9..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:12 Download gff for
UFO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10731529..10732125 | 158..757 | 99 | <- | Minus |
| arm_2L | 10732186..10732334 | 9..157 | 100 | | Minus |
