UFO06555.5prime Sequence
1124 bp (1025 high quality bases) assembled on 2009-08-18
> UFO06555.5prime
CAGTCGACATGCTCTCCAACCTGGTGGTGACCAAGCAGAAAGTGGTCCTC
GTAATAGATGAGCTAAATCGGGAGCGCATTGCCCCCAAGTTCATCGGCAG
TCTGCTGCACGAGCAGGGACAGGGGGCGGATACCATCAAGGCCCTGCCCA
CCGGCGTCAGCCTTAAGCACGTGGCCACCTTCGAGGCACTGATCGACAAG
TACGCCAACAACAACACTGGGAGTACTACGGATTCCAACTCCACTGGCTT
TAACGTCATCCTGCCAACATTGGCAGACCTGCTGTGCTACCAGACGCCTG
CTTTCATATTTGGCTTCCTCAACCGCCTACGCCGCTCGGACAATGTGCGT
CGGGTGTTCCTTTGGGCCTCCCCGCAGCACCTGCAGGATCCGCATGCCGA
CTACATCCTGGCTGGCTGCGAGTACCTGGCCGAGCTGGTCCTCCGACTGG
AATCGGACAAACTACTCTCGCTGATATCACGCAAGCCGGGCGGAGGGGTG
TCCAACAGGCGCTACTCCTGCGAAGTCAGCAAAACCCAGTTCAAGGTGAC
GCCGCTGGACGGAGGACTGCCTGCAGGTGCCTCCCCCAAGCAGCCCTCGC
CCGAGGCGGAGCAGACCACAGAGCCGGCCAGCAGCACCTTCAAAATCGAG
CTTGACGAGGATGAAGTGTTGGCCCGCAATGCACTCACCCTGCCATACGA
ACGCACATCCGAGCCGTCTGAGGGAAACATAATATACACGCCCGATGCCG
ACGACGATTTCGACGAGGAGGATCCGGACGAGGATCTGTGCATCGCAAGC
TTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCA
TAATCATAATCATAATCATAATCACAACTAGCCTAGAGATCCTGGTCATG
ACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCG
TTCTGAACAAATTCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAAC
AGGAGTCCAAGCGAGCTCGATATCAAATACCGCCCCGCCTGCCCCTCATC
GCAGTACTGTTTTTATTCATTAGCATTCTGCGACTGAGCCAACACAACGC
ATGATGACTGGATCGCCACCGCAT
UFO06555.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2034-RB | 1284 | CG2034-RB | 247..1032 | 9..794 | 3915 | 99.9 | Plus |
| CG2034-RA | 1149 | CG2034-RA | 112..897 | 9..794 | 3915 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2257870..2258517 | 56..703 | 3225 | 99.8 | Plus |
| 3L | 28110227 | 3L | 2258579..2258670 | 703..794 | 460 | 100 | Plus |
| 3L | 28110227 | 3L | 2257754..2257807 | 9..62 | 255 | 98.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:08 has no hits.
UFO06555.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:57 Download gff for
UFO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 86..877 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:08 Download gff for
UFO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 112..903 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:09 Download gff for
UFO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2034-RA | 112..903 | 9..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:09 Download gff for
UFO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2257754..2257802 | 9..57 | 100 | -> | Plus |
| 3L | 2257872..2258517 | 58..703 | 99 | -> | Plus |
| 3L | 2258580..2258676 | 704..801 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:08 Download gff for
UFO06555.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2257754..2257802 | 9..57 | 100 | -> | Plus |
| arm_3L | 2257872..2258517 | 58..703 | 99 | -> | Plus |
| arm_3L | 2258580..2258676 | 704..801 | 96 | == | Plus |
