UFO06556.5prime Sequence
1085 bp (1007 high quality bases) assembled on 2009-08-18
> UFO06556.5prime
CAGTCGACATGAATCTGGAATCTCTGTTCCGCGACTTCAATCCCTGCAAG
TTCATCGTCCACTGCAGCCTGTTCATCTTTGTCACGCTCTTCGCCTTGCG
CCTCGACAACTACATTGATTGGCCCTACTGGGCGATTTTCACACCGCTAT
GGATATGGAAATGCACCGCCATCCTGGGCGCAATCGTAGGAGCCATTGTG
TGGTGTCGGTATCCGCATTATCGTCTCGAGGGCGATGCCTACACGCAGTT
CAAAGCGATGCTCATCTCACTGGCCCTGCACCTGATCCTGCTGATGTTTG
AGCTGCTGGCCTGCGATAAGCTGACCTCGGACCGTCACTTGTGGGTGCTG
GTCTTCATTCCGCTGATCTTCGGCTCGGTGGTTAGTGTGGGCGCCTGTGT
CTGGGCCGTCAAGCACGATCGCTCCTTCGAGCTGGAGCTCTTCCTGGCGG
TCAACGCGCTTCAGTTTGTTTCACTGCCGCTAAAGCTGGATCGCTTTGTC
TACTGGAACTGGGACGTAGTGTTTGTGCCCATGTGGATCGTCATATGCCT
GAGCCTGGTCAGCGTATTGTATAACATCATCTTCTGTGGCATCATGATGC
GTACGCCGGAGGTCTCGCTGCAGCAGAAGAAGGCGGCATTAAACGCAGCG
GTGGGCAACATCTGCACGGTGCTCCCACTGCTCTGCTTTCAGGTGGTCAT
CTGCGACAAGCTGGACGGCGAGCTTAAGTTCCCGTACATCGTGGTCTTCT
CACCGCTGCTCGTCTCTATTCTGGCGCTAATAGTTCTTAGCTCCTCGGCA
AAGGGCGGCAACATGTGGTGGTTCGGCATCCGCAAGTCTTTCAGCCAGTT
CCTGTTGTCCGCGATGCCGTTCCTGCAGGAGTACGGCACATCAGCTATCA
CCCGGAAACCCACAGCATGCTGCACAGTCCATGCGCTGGACGCAGCGTCT
CCTCGACGAGCATGCGCAGCGAGCAGCTGCACGAGTTCCACAGCACGACA
GAAGAGCAGAGGGCAGAATGAATTCTCAGCCGGTGTCGTTGTCACATCGA
TTGCGGAGCAGCTTCTAACATTCATGGCCGGCAGT
UFO06556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14194-RA | 1940 | CG14194-RA | 276..1321 | 7..1035 | 4845 | 98.4 | Plus |
| CG14194-RB | 1868 | CG14194-RB | 386..1249 | 189..1035 | 3935 | 98 | Plus |
| CG14194-RB | 1868 | CG14194-RB | 276..386 | 7..117 | 555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19194423..19195001 | 117..695 | 2895 | 100 | Plus |
| X | 23542271 | X | 19195056..19195365 | 690..992 | 1240 | 97.1 | Plus |
| X | 23542271 | X | 19193947..19194018 | 46..117 | 360 | 100 | Plus |
| X | 23542271 | X | 19193830..19193869 | 7..46 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:56 has no hits.
UFO06556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:31:56 Download gff for
UFO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 259..1276 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:14 Download gff for
UFO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 271..1288 | 1..1011 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:43 Download gff for
UFO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14194-RA | 271..1288 | 1..1011 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:43 Download gff for
UFO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19193825..19193869 | 1..46 | 95 | -> | Plus |
| X | 19193948..19194018 | 47..117 | 100 | -> | Plus |
| X | 19194424..19194998 | 118..692 | 100 | -> | Plus |
| X | 19195059..19195418 | 693..1035 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:14 Download gff for
UFO06556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19087858..19087902 | 1..46 | 95 | -> | Plus |
| arm_X | 19087981..19088051 | 47..117 | 100 | -> | Plus |
| arm_X | 19088457..19089031 | 118..692 | 100 | -> | Plus |
| arm_X | 19089092..19089451 | 693..1035 | 95 | -> | Plus |
