UFO06558.5prime Sequence
392 bp (392 high quality bases) assembled on 2009-08-18
> UFO06558.5prime
CAGTCGACATGGCATCTGTGGACGTCGGCTCCAACAATCAAGTTACTGTT
ACCGTGCCAAATTCTGAAAGTTCCGGAGTGCCTCATACAGTTTATAAGGG
AAATCAGAGAGAGTATGCAAAGGAGTGTTTGATGATCTACGACAAGGAGA
CGGGCGCCATCACCATAGAAAAGCTAAACCACAATATTCAAGTGAAGAAG
ACCAGGAATGAAGTCACCAACAAGTCAGTCCAGCTGCCTGGTCAGAACAT
GGGTCAGCCCCACAATCAGGGTGCGAACGGAGCGGCACCAGTCGCGGTCC
CGGTACCTGGTCAAGGCTCGGGAACGGCACCCAAAATGGAGAATAGCACC
ATGCGAATCTCAACCAAGACGAAGGTTTCTACCGGCAGCCGT
UFO06558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Eaf-RB | 2041 | CG11166-RB | 518..902 | 8..392 | 1925 | 100 | Plus |
Eaf-RA | 3095 | CG11166-RA | 1572..1956 | 8..392 | 1925 | 100 | Plus |
Eaf-RD | 3869 | CG11166-RD | 970..1354 | 8..392 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7399629..7399818 | 392..203 | 950 | 100 | Minus |
2R | 25286936 | 2R | 7399873..7400013 | 206..66 | 705 | 100 | Minus |
2R | 25286936 | 2R | 7406038..7406096 | 66..8 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:04:56 has no hits.
UFO06558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:04 Download gff for
UFO06558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11166-RE | 1034..1424 | 1..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:35 Download gff for
UFO06558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf-RD | 964..1354 | 1..392 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:55 Download gff for
UFO06558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Eaf-RD | 964..1354 | 1..392 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:55 Download gff for
UFO06558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7399629..7399815 | 206..392 | 100 | <- | Minus |
2R | 7399874..7400012 | 67..205 | 100 | <- | Minus |
2R | 7406038..7406102 | 1..66 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:35 Download gff for
UFO06558.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3287134..3287320 | 206..392 | 100 | <- | Minus |
arm_2R | 3287379..3287517 | 67..205 | 100 | <- | Minus |
arm_2R | 3293543..3293607 | 1..66 | 96 | | Minus |