Clone UFO06558 Report

Search the DGRC for UFO06558

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:65
Well:58
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO06558.5prime Sequence

392 bp (392 high quality bases) assembled on 2009-08-18

> UFO06558.5prime
CAGTCGACATGGCATCTGTGGACGTCGGCTCCAACAATCAAGTTACTGTT
ACCGTGCCAAATTCTGAAAGTTCCGGAGTGCCTCATACAGTTTATAAGGG
AAATCAGAGAGAGTATGCAAAGGAGTGTTTGATGATCTACGACAAGGAGA
CGGGCGCCATCACCATAGAAAAGCTAAACCACAATATTCAAGTGAAGAAG
ACCAGGAATGAAGTCACCAACAAGTCAGTCCAGCTGCCTGGTCAGAACAT
GGGTCAGCCCCACAATCAGGGTGCGAACGGAGCGGCACCAGTCGCGGTCC
CGGTACCTGGTCAAGGCTCGGGAACGGCACCCAAAATGGAGAATAGCACC
ATGCGAATCTCAACCAAGACGAAGGTTTCTACCGGCAGCCGT

UFO06558.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
Eaf-RB 2041 CG11166-RB 518..902 8..392 1925 100 Plus
Eaf-RA 3095 CG11166-RA 1572..1956 8..392 1925 100 Plus
Eaf-RD 3869 CG11166-RD 970..1354 8..392 1925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7399629..7399818 392..203 950 100 Minus
2R 25286936 2R 7399873..7400013 206..66 705 100 Minus
2R 25286936 2R 7406038..7406096 66..8 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:04:56 has no hits.

UFO06558.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:04 Download gff for UFO06558.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11166-RE 1034..1424 1..392 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:35 Download gff for UFO06558.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf-RD 964..1354 1..392 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:55 Download gff for UFO06558.5prime
Subject Subject Range Query Range Percent Splice Strand
Eaf-RD 964..1354 1..392 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:55 Download gff for UFO06558.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7399629..7399815 206..392 100 <- Minus
2R 7399874..7400012 67..205 100 <- Minus
2R 7406038..7406102 1..66 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:35 Download gff for UFO06558.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3287134..3287320 206..392 100 <- Minus
arm_2R 3287379..3287517 67..205 100 <- Minus
arm_2R 3293543..3293607 1..66 96   Minus