UFO06560.5prime Sequence
977 bp (-102 high quality bases) assembled on 2009-08-18
> UFO06560.5prime
CCGTCGACATTTCCCCTGCCATAAACCCTACCGTCAGCACCCCTTTTGAC
TCCACCACGGTGGCCAACGGAACACTTAACACCACTGAAAGTACCACATC
GGATTGGGAATACGTTAACACCACTTCCGTCACAATTTGGATCAACGGTG
GCGGCTACGATGGTCCATACATGTTATTTTATCCCAGCTATGTCATTTAC
ATTGTGCTGGTCTTCCTCTTCGTCATCGCCTTTCCTCTGGCCATGATTAT
GAGCGCCAAACGCAAGCAACAGACCAATGTGCGGAATCTGGCCCAGCAGA
GACAACGAGCCCGTCGCCAAATGGAGATCAATGTGACAAACAATTGCCAC
GGCGGCTCCGGAGGAGTCGGAAACGTGTGCTCAAACAGCCAGAACGAAGT
TAGTGTCCTGCCCAAGACCTTGGATTTGCCGCCCAGCTACAACGAGGCCG
CTTTTAGCGAGCGAAAGCAGGACAGCACACTGACCATAGCCACCAGCTTG
GAAGCGAGCAATCCCAATTTGGCGGTTGGAATTAACGAACCACCGCCGGT
TTACGAGGCGAACGTGGCCACAACCACCACTTCCACCACCACCACCGTAT
TTTTGGTCAACGGCCAACCACCAGTGGTGGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAA
TCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGAT
TCTCACCAATAAAAAACGCCCGGCGGCAACCGACGTTCTGAACAAATCCA
GATGGAGTTCTGAGGTCATTACTGGATCTATCAACGGAGTCCAAGCGAGC
TCGATATCAAATTATGCCCCGCCCTGCCACTCATCGCAGTACTGGTTGTA
ATCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAA
CCTGAATCGCAAGCGGCATCAGCACTT
UFO06560.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4741-RA | 881 | CG4741-RA | 103..719 | 13..629 | 2950 | 98.5 | Plus |
| CG4741-RB | 854 | CG4741-RB | 367..692 | 304..629 | 1570 | 98.8 | Plus |
| CG4741-RC | 880 | CG4741-RC | 437..758 | 308..629 | 1565 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24610963..24611284 | 629..308 | 1565 | 99.1 | Minus |
| 2R | 25286936 | 2R | 24614033..24614271 | 251..13 | 1135 | 98.3 | Minus |
| 2R | 25286936 | 2R | 24613914..24613972 | 309..251 | 265 | 96.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:16 has no hits.
UFO06560.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-10-05 15:32:03 Download gff for
UFO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 77..705 | 4..633 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:12 Download gff for
UFO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 94..722 | 4..633 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:03 Download gff for
UFO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4741-RA | 94..722 | 4..633 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:03 Download gff for
UFO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24610960..24611282 | 310..633 | 98 | <- | Minus |
| 2R | 24613914..24613971 | 252..309 | 96 | <- | Minus |
| 2R | 24614033..24614280 | 4..251 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:12 Download gff for
UFO06560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20501556..20501803 | 4..251 | 97 | | Minus |
| arm_2R | 20498483..20498805 | 310..633 | 98 | <- | Minus |
| arm_2R | 20501437..20501494 | 252..309 | 96 | <- | Minus |
